RNA id: TU73232


Basic Information

Item Value
RNA id TU73232
length 3167
RNA type TUCP
GC content 0.57
exon number 1
gene id AMCG00009694
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44561777 ~ 44570531 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCCATCCCGCCGCCTCCGCCCCTGCTGCTGCCCCTGCCCTTGCCGCAGCCGCGCATGGAGTGGAAGGTGAAGGTGCGCAGCGACGGCTCCCGCTACGTGGCCAAGCGCCCGGTGCGCGACCGGCTGCTCAAGGCCCGCGCCATGAAGATCAAGGAGGAGCGTAGCGGCATGACCACGGACGACGACGCGGTGAGCGAGATGAAGATGGGCCGCTACTGGAGCAAGGAGGAGCGCAAGCAGCAGCTGATGCGTGCCCGGGAGCACCGCCGCCGCCGCGAGTTCATGATGCAGAGCCGTCTGGACTGCCTGCGCGAGCGCGAGCAGCGGGAGCACGGGGGCGGCGCCGGCGCCGGGGCGGACGGGGGCCGGGCAGAGGCCAGCATCCTGGAGCTGAGCCACCGCAAGGCCGTGAAGAAGAGGAGCCGCCGCATCCTGGACAACTGGGTCACCATCCAGGAGATGCTGGCCCACGGCACGCGCTCTGCCGATGGCAAGAGGGTCTACAACCCGCTGCTCTCCGTCACCACCGTGTAGCGGGGCAGGGCGGCAGGGGGGAGATGGAGGGGTGAACGGACGGATCCCTAACCCACCTGAGACATTAATGCTGCACAGGAacagtgagagagcgagagacagagagagagatagagagatgagagatagagacagagagaaagatagagatgagagagacggggagatgAGACTCTCTGGACACCAGGCTGCCGGTCATTGATGTTGGGCGAACAAAAGAGGAAAGGGAAGacaggaaaagagagagggaagagagagaaagagagagaggggatcgGTGCAGCACAGACGCAATACATCACTAGACACCACCCTGTGccgagagaatgagagagatagagggtgAGGGGGGATTGGTGCACACAGATGCAATGCATCAccggaaagagagagagtgagagacacacagatgtAAGAAGGGTCTTGACAGACTCGGGGGGTCGCTGGGGGGTCACAGTGCACCTGCACAGCCCCTCACACAACACTACCCCCACCCACCGTCTCTCTCCTGACGCACACACTGTCGCTCAGTGTTTTCCTACCAGTCCTCCCCTACCTGCCTTTACAACGAGTCAGTTCTTCAGTGTGTGTCTCCGGGTggggctgtgtgttgtgtgcgtgGGGGGTCTGGGTGAGTGACGTTCAAAAAGCACACAAAGTGAATAGGGAATGCACAATACTTTCTGTAATTTTTCtacttgtattatatatataaaactggaCTGGATTCTCGACATCccgggaggaggagagagggacgGGGGGAGACGCACAGGGACagcccccgtctctctctctctctgccgcAGGGCTGCGCGTCTGGTGCGTcagccccctcctcccccacgCGCCGCCTCGccctcagctctctctctctctctctttcctctaaGTGTGGAATCCCCCACTGCCCCTTGGACAGCAGCCCCGTGTCGAGCCCCCGTGTGGAGccacatggagagagagacaccagaccGGACTCTGGACGCCCGCTGTCCGAGCTGAACCAGGGGTGACCCCAGTGCCGCCCTGCTCACCTGCCGGACTGAAGGAGGGGCGGGACTTTTGACAGCTGTCCAAATGTCATGACCTCTCCGCTGCCCATTCCTGCTGAACGTACCGTAGTGCGAACGCAGACGAAATAGCCGTGTTCAGGGGGAGGGGCTTCGTATTGCAAGataataaaatagttataataaggGGTTTGACAAAAGACACAATGCTGCTGGTGCTGCGGAGCCCCGGGCCGGACCGGGACGTTGGGGGACGTGTGACTCCTACCTGGGAGCAGTTTTACtctggttttgtattttaaggaGAACAGAAAAACAGCCGGAAAAATAGAAATCGGTCGAAAGTGGAAGTTACTGAGCCGTGCAGCTGTTTGactgcgtatgtgtgtgtgcgtgtgcgtgtgtgcgtgcgtgtatgcgtgtgtgtgcgtgtgtgttacGGGGCTCACTCTGTGACACGACCCCTCTGAAGGCAGTGTATGAATCTCCCACGTCGGGACACCGTCTGTTTGGCACAGGTTTGTCGCTGTGCTGGGCGGAGGTGTGCGGTGTGTGACAGTATGactgcgcatgtgtgtgtgtcggtaTCCGTGccgtgtccgtgtgtgtgtgtgtccgtgtcctTGAGTGTCAGCCGATGCCATGGTGCTCTGAGGGACAACTGTGTGACGCACAGCTCCCTCTGCCAGCCAAAGCCTGCACCCCGAGGTGAAAGGTTAAAAGCTAAGGTTAATAACCGAAGTCTCCCCCACTCTCCTGTCCCCGCTGTCCTTCCACACGGGGACAATTACACAACTACAGCCATGTGCTCCTTCAGAGGCCCTCCCTACCCTCTTCCGCTCCGTTCTCACGTGGTGCTGTAATCCGCTGTAATCAGGTGTAATCAGGTGTAATCAAGAACAGTCAGCTGTATTTCAGCCTCCTGCTGCCCCTGACATGGACTGTGGAGGCTTTATAATGACACacaagagggggagagagacgggGCAGGGGGCAggttctgacacacacacatgcgctgCGGTCGTTCCCGGGCCTTGGGTCGGGGCGTACAGCTGTAACTGGGCTTGTCTGCCAGGGCAATTGTCCTCCACCACACTGTTGTACATTTTCTACTGGATGGCTGTGGCGGCGCCGATGTCAGCCGTGAGATTCTCCAGAAAGGTCCAGTCGAGTTGGACCGGGTCATGGTAGGGAACGAAGGGTCCGCTTCCTTACTTTTAATGAATATTAGTTTAAGTATCGAGTGCTTGGGGTGATTGGCGGGGCGAGTGACGGACGCTCCCCCGGATGACGGCTGCGGCTCGTTCTGTACATTCTCTGCATGGTGttcaaaagaaatgtaaagaaattcaacatgaaaacagaaaaaagtgtttaaacaaTACTGATTTTGAAGCTCCGGGGCGGTAGCGGCCGAGGAGCGCGTAGTCCCTGTGTTGGTGATCTTTCTAGGTGTTTCCGTGtcctgtttctttgttttagatttgcataaagttgaaaaacacaaaaaagaaagaaaaagaaaaaaaaaagctttggcGTGCATCTGTGTGTTCACTGTACTGTTCTCTGTCCTGGTCCcgggatttgttttaaatcaataaacgACCTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73169 lncRNA upstream 84118 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 159797 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 177283 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 207303 44328271 ~ 44360062 (+) True G58513
TU73142 lncRNA upstream 241792 44325151 ~ 44325573 (+) True G58510
TU73281 lncRNA downstream 188746 44759277 ~ 44760058 (+) False AMCG00009706
TU73337 lncRNA downstream 322314 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 347512 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 351553 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 572644 45143175 ~ 45143472 (+) True G58776
AMCG00009699 mRNA upstream 64926 44492695 ~ 44502439 (+) True AMCG00009699
AMCG00009695 mRNA upstream 77286 44483967 ~ 44490079 (+) True AMCG00009695
AMCG00009696 mRNA upstream 85304 44450103 ~ 44482061 (+) True AMCG00009696
AMCG00009698 mRNA upstream 125309 44439574 ~ 44442056 (+) True AMCG00009698
AMCG00009689 mRNA upstream 181193 44382557 ~ 44386172 (+) True AMCG00009689
AMCG00009700 mRNA downstream 27925 44598456 ~ 44603609 (+) True AMCG00009700
AMCG00009703 mRNA downstream 71419 44641950 ~ 44642771 (+) True AMCG00009703
AMCG00009702 mRNA downstream 77485 44648016 ~ 44653748 (+) True AMCG00009702
AMCG00009701 mRNA downstream 90283 44660814 ~ 44666978 (+) True AMCG00009701
AMCG00009711 mRNA downstream 139308 44709839 ~ 44712088 (+) True AMCG00009711
TU73161 other upstream 179401 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 631603 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2489124 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3572706 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 4462417 40102383 ~ 40104948 (+) False AMCG00009516
TU73244 other downstream 14031 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 62219 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 485534 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 937663 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 989446 45559977 ~ 45571635 (+) True AMCG00009759

Expression Profile