RNA id: AMCG00009700


Basic Information

Item Value
RNA id AMCG00009700
length 1671
RNA type mRNA
GC content 0.66
exon number 4
gene id AMCG00009700
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44584562 ~ 44603609 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTTCTCGGCCTAAAACAGTGCGCGGGCGTCACTCTGCCCGGCTaaATGAGCCTCTGAGACCCATCAGGAAAGGAAAAGCTGCAGAGAACTCGAAGCAGCGgcagaaggagggagaggaggaggtgcGCCCTGTCCCTTCTCGACCACCCCCCTCCCGCGGCACCATGACCCCTGGCGGGCTGGCGCTGGCGTTCGCTCTCCTGTGCGAGGCCGGGATGTGGCTCGGCGGCGGGGGGCTGCCCTTTCCGGAGCCCTCGGGCACCCCATCCCTGGCTCCTGGCCACGCTGGCGTCTTCCGGGTGTCGGACACCAGCCTGACGCACCTGACAGTGCACCGCACCACGGGAGAGGTGTACGTGGGCGCCGTCAACTGGGTGTACAAGCTGTCGGCCAACCTGACGGAGCTGCGGGCTCACGTGACCGGCCCGGTGGACGACAACGCGCGCTGCTACCCCCCCCCCAGCGTCCGGGCCTGCGCGCACAAGCTGGCGCCCTCCGACAACGTCAacaagctgctgctgctggactaCGCCGGGGAGCGGCTGGTGGCCTGCGGGAGCATCTGGCAGGGCGTGTGCCAGTTCTTGCGGTTGGACGACCTGTTCAAGCTGGGGGAGCCACACTACCGGAAGGAGCACTACCTGTCGGGGGCGCGGGAGGCGGACGGGATGGCGGGCGtggtggtgggggaggaggaggggacgGCAGGAGGGGGAGGCGGCGAGGgcaagaggaagaagaagggaGGCAGCCGGCTGTTCATCGGCGTGGCCATTGACGGCAAGTCGGAGTACTTCCCCACGCTGTCCAGTCGCAAGCTGGTGGCGGACGAGGAGAGCGTCAGCATGTTCAGCCTGGTGTACCAGGACGAGTTCGTGTCGTCGCAGATCAAGATCCCCTCGGACACGCTATCCACCTACCCCGCCTTCGACATCTACTACGTCTACGGCTTCTCCAGCGGCACCTACATCTACTTCCTGACACTGCAGCTGGACACGCAGCTCACGCAGATGGACGCCGCGGGCGAGAAGTTCTTCACCTCCAAGATCGTGCGCATGTGTTCCAACGACACAGAGTTCTACTCGTACGTTGAGTTCCCGCTGGGCTGCACCAAGGACGGCGTGGAGTACCGGCTGGTGCAGTCCGCCTACAAGCAGCGGCCGGGCCAGCTCCTGGCGCGCGCTCTGGGCCTGCCCGAGGACGAGGACGTGCTGTTCGTGCTGTTCTCCCAGGGCCAGAAGAACCGGGCCAACCCGCCCCGTGAGACGCTGCTGTGCCTGTTCACGCTGCGCCAGGTCAACCAGGCCATGCGGGAGCGCATCCGGTCCTGCTACCGGGGGGAGGGCAAGCTGTCCCTGCCCTGGCTGCTCAACAAGGAGCTGCCCTGCATCAACACGCCTAAGCAGATCGGCGACGATTTCTGCGGCCTGATCCTGAACCAGCCGCTGGGCGGGTTGCGCGTGATCGAGGGCACGCCGCTGTTCGACGACCGGGCGGACGGCATGGCGGCGGTGGCGGCCTACACATACGGGCAGCACTCGGTGGTGTTCGTGGGCACACGCAGTGGCCACCTCAAGAAGATGAAAGCTGTGCTCTGTGCCGCGGTACAGCCGGGCCGCAGAAGCCGGGCCTCCACAGTGAGTCGGAGCCGCATGGAGAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73169 lncRNA upstream 115209 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 190888 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 208374 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 238394 44328271 ~ 44360062 (+) True G58513
TU73142 lncRNA upstream 272883 44325151 ~ 44325573 (+) True G58510
TU73281 lncRNA downstream 155668 44759277 ~ 44760058 (+) False AMCG00009706
TU73337 lncRNA downstream 289236 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 314434 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 318475 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 539566 45143175 ~ 45143472 (+) True G58776
AMCG00009694 mRNA upstream 30556 44561777 ~ 44567900 (+) False AMCG00009694
AMCG00009699 mRNA upstream 96017 44492695 ~ 44502439 (+) True AMCG00009699
AMCG00009695 mRNA upstream 108377 44483967 ~ 44490079 (+) True AMCG00009695
AMCG00009696 mRNA upstream 116395 44450103 ~ 44482061 (+) True AMCG00009696
AMCG00009698 mRNA upstream 156400 44439574 ~ 44442056 (+) True AMCG00009698
AMCG00009703 mRNA downstream 38341 44641950 ~ 44642771 (+) True AMCG00009703
AMCG00009702 mRNA downstream 44407 44648016 ~ 44653748 (+) True AMCG00009702
AMCG00009701 mRNA downstream 57205 44660814 ~ 44666978 (+) True AMCG00009701
AMCG00009711 mRNA downstream 106230 44709839 ~ 44712088 (+) True AMCG00009711
AMCG00009708 mRNA downstream 135070 44738679 ~ 44746329 (+) True AMCG00009708
TU73232 other upstream 27925 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 210492 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 662694 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2520215 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3603797 40990802 ~ 40994659 (+) True G57604
TU73251 other downstream 29141 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 452456 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 904585 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 956368 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 1150977 45754586 ~ 45755115 (+) True G59084

Expression Profile