RNA id: AMCG00009706


Basic Information

Item Value
RNA id AMCG00009706
length 3071
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00009706
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44750176 ~ 44760058 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAGTCCGCAGTCGCGCCGCTCGCTGCTCTGTGCGCTGAGTTGACATGCGCTGCCGCTCCTGACTGCTTCTCCGCCGGACATTCGCTCTGCCTGCAGCTCGGGATGCTGGACAAGCGGGGGGACGAGCTCTACCTGCCGCAGGAGAAGGAGGTGAAGGCGAGCCCAGCGCGCTCTGCTGGAGGAAGAGCTCCGGGCTGCGCTGGTACGCACCTGGCCCGGTTAGATCTCGCCAGAGCAGTTACTTGCGATGTTGTAATTTTGGCTTCGTTTGCGCTGGTTTACACGCTGGTCGTTGTGCTGGAAGTCGCGCATTTAACCTCCATTGCGGATTGTTCTCTTTCCACTGAGCTGCGCGGCAGCGCGTATACGACCCTGACGCAGAAACTGCTCAAGCGGAGCAGACtgccgcagctctgcgcagatctgcacactcCCACTGGCGGAGCCGTGCAAAGCTGCGGGAGtctggtgtgcaTGAAGGAGCCGTTTGAGACGCAGTACCAGGTGGGGCAGCTGCTGGGCAGCGGCGGGTTCGGCTCCGTGTTCGCGGGGCAGCGGCTGTCGGACGGCTCTCAGGTGGCCATCAAGCAGATCGCCGGCGAGCGGGTGCAGCAGTGGGCCCGGCTGCCCAGCGAGCCCAACCCGGTGCCCATGGAGATCgctctgctgctgcagctggggGGCGGCCCCGGCGCCGGGCCCCCGCACCGCGGCGTGATCCGCATGCTGGACTGGTTCGAGATGCCGGGCCAGGGCTTCCTGATCGTGTTCGAGCGGCCGCAGCCCTGCAAGGATCTGTTCGACTTTATCACCGAGAGGGGGGCGCTGGACGAGGCCCTGGCACAGAGGTTCCTGCGCCAGATCGTGGAGGCTCTGCGCTTCTGCCACGCCCGCGGCATCGTGCACCGCGACATCAAGGACGAGAACGTGCTGGTGGACACGCGTACCGGAGACATCAAGATCATCGACTTTGGCTCGGGCGCCCTGCTCAAGGACGGGCCCTACTCCGACTTTGAGGGCACGCGGGTGTACAGTCCTCCAGAGTGGGTCCTGCACCAGCGCTACCACGCCCGGCCGCTCACCGTGTGGTCCCTGGGGGTGCTGCTGTTCGACATGGTGTGCGGAGACATCCCCTTCGAGAGGGACCGGGAGATCGTGCACGCCCAGCCCCAGTTCACCAAGCGCGTCTCCAAAGAGTGCCAGTCTCTGATCCGCTGGTGTCTGGCGTTCAGGCCCGAGGATCGGCCCACCCTGGAGCAGGTCCTGCTCCACCCCTGGATGGAGGCGTCCGTGGAGGAGGAGGGCGACCTGCCTGGACCCCACAGCATCCTGCCCTGCCAGGCCAGCCTGTGACCTGCATCCTGGGGGGCGCCGAGGGGACGGGTGGGGGGCACCGGACATGCCCGACACAGAGACTCTGGCCGCGACCGCTACCTGCCCCCTCGAGAGAACGAAGCAGgagaacacattttatttattttctgccacgatgtatttattttgtacgaACACATTGCTCAGGGATGCGATCGGCTGCCGTCCTAGCTGTGGGGGGGTGTGGCTGTGGCCTGCGCCGGGATCGGGGGTTCACTGACCTCTTCCACGGGGCCCCCGAGACCCAGATCGGCCCGGTCCGGCGCCACCAACCCCGCAGGCTGGATCTGCCGAGTAGGACGATTTGTTTACAGATGCAGCCGAATCGCAGACGCACACAGGCTACACTGGCCGATGagattgagatttatttttaatttattgtagttttatttatcGCTATTTATTCGTGCCCGTCTCTTGGGGGGGCTCCTGTATTTATTCGGCTCTCGTGTCGGATGGCATGTCCGGACCATCCCCGGGGGAGCGGCGCCGGGGCGTACAGACCTGGTTTTACAGGTTGTTAACGGCAAAGACTGTGGTACCTCATTTTAAGAGGAAAGTAAAAACTCTTTGAGCTCCTTGAGCGGGATGCGGGGGCTATGGAGGCCCGGGACGAGGAAGAACAGAAGCTCAGGTCCCGTGGCGGGGATTAAGCTACCCGAAAGACACTCCTTCAAACCGCACCGCTGACTGGTGTGTGCTGATTGCAGACTCAGGGAAGCCGCTCATCGTGTTTAACGCAGAAGATGGATGCCATCGTCTCTTCCCGTCAGGCCACACAGGAGCTGATGTAGTCTGAGGGAGTTACTGATTAAGGGAAGGGATTTCCATCAAACAACTTTTTGTGATCCTTTGTCTTGCAAAATCCTGTGCTGGGAATCCACTGTCTGCGAACACGGGGTCCAGGCTTTGTGCTGCTGGACAATTACAGTGGAAATCACTTTGAATGTCATTAGATTGAACTGCAAACGcaggtttatacattttttagaggttttattttgtgtgtgtgggtgcagATAACAACTCAGGAATGTGTTGGCGTTTTCAGGTTACACCATCCCTTACCTCAGAGGAGAAGGGGGGGTGGCCCGTGCTGATCAAGATTGGtttgggtgggtgggggggggggcaggttgTCTTCCACAGACAGGAGCCGTCTCAGCCCTTGGCTGGGATGGCTGGTCTgaagggttttatttatttttgttttcactttttctctccAGCTATGTGAGACTggtgcagtgcattgtgggatatgGTTTCATACAGCCACCCACCTCTGTGATCACAACCCTTTGGCAAGATGATTGGGTTGATCAAAGACCTTTAAAAGTCTTGGGTTCACCGTTTCATCTCTAGGAACTGTTGGGTTTTATTCCACTTCCCAGGGACTCTGATCCTGCCCCATCGGTTTTAAATGACTATCTATGAACTCTAACAGGGTgatgagaaaacacagaagtgcCAAAAGGGGCTTTGTTTAATCCTGGTTATACACTGGGGTTAGtccatttaatttcctttgtaaatactcatgtattgttttgctgTAATGTGACCATTGTCACACTTCttgttctgtttctgttatTGAAATGACGGGGGGGttggtttgttatttattacaatCCCAGTGCTCGGGCTGGAGGTAGTCTTCCTCAGCCATGTCTGAATAAAAGCAAGTG

Function

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007634 optokinetic behavior biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73169 lncRNA upstream 266929 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 342608 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 360094 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 390114 44328271 ~ 44360062 (+) True G58513
TU73142 lncRNA upstream 424603 44325151 ~ 44325573 (+) True G58510
TU73337 lncRNA downstream 133033 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 158231 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 162272 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 383363 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 434711 45194523 ~ 45198264 (+) True G58792
AMCG00009708 mRNA upstream 3847 44738679 ~ 44746329 (+) True AMCG00009708
AMCG00009711 mRNA upstream 38088 44709839 ~ 44712088 (+) True AMCG00009711
AMCG00009701 mRNA upstream 83198 44660814 ~ 44666978 (+) True AMCG00009701
AMCG00009702 mRNA upstream 96428 44648016 ~ 44653748 (+) True AMCG00009702
AMCG00009703 mRNA upstream 107405 44641950 ~ 44642771 (+) True AMCG00009703
AMCG00009707 mRNA downstream 4224 44764036 ~ 44768228 (+) True AMCG00009707
AMCG00009709 mRNA downstream 9062 44768874 ~ 44780968 (+) True AMCG00009709
AMCG00009712 mRNA downstream 96715 44856527 ~ 44881725 (+) True AMCG00009712
AMCG00009714 mRNA downstream 141614 44901426 ~ 44916843 (+) True AMCG00009714
AMCG00009715 mRNA downstream 168055 44927867 ~ 44933814 (+) True AMCG00009715
TU73251 other upstream 98209 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 150848 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 179645 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 362212 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 814414 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 296253 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 748382 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 800165 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 994774 45754586 ~ 45755115 (+) True G59084

Expression Profile