RNA id: AMCG00009707


Basic Information

Item Value
RNA id AMCG00009707
length 2980
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00009707
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44764036 ~ 44768228 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAACGGTATATTAACAGTATGGGCTTATGAAACTCACTTTAATGGACTTTaagtagttctagatttgcatgaacagtttttcttAAGTTGTCGTGattgaattcaaaaggaaagttagaaCCTTGCTGAGTCGATCAGAGCTATATCAGCTGCCATTCTGCAATTGTGTATCAAAACGAGagcatatacataaacaagaaaataataaacggCTCGGTCTAACAGCTGTGTacatcaatacagaaaacacgcttttcaacactacagtgcgcTATAATAGAAACAGATCAAACAGATCAAGACAATGACCcaggaacgagagtagttgTCATTCGTTACTTTCCAGCCCTGCCCAGACAACACCACATCCTCGCAGCAGTAAGGTTGAGGGTTGGTTGGGGCCACAGCGCTGTGACAGCGTCAGAAACGCCAATTGCAACGCACGCGAGGTAACGTTTGTGAGCGGGTCCGAGCAAAGTTCCCTCGTGTGATGCGGTGGAGAGCTAATAGCAGCGCTATCATACCTCGGCAcagtctgtctttctctgaGAACTGAAAGGATGGCTTAGACTAAGAGATTAGATTGCGTTGTTGATTTTTACAATCCCTTGTTGTAATGCCAAGTATCAACTGATAAGTTTAAGAAGTTTAAGGATATTTCAAATTTGCTTGCCTTTACAGAGCAACAGTTAATAACCTTAATAATAAATTTTGGTGTGACTGTGACTGTTCAGCTGTGCCTTCCTGTAACATGCAGACCTGAGTTCAAGACGTGACAGAAATATAAACGATATAGATCTGTACTATATATTAATGCGACCATAATAGTAAACTGAATGATGTCAGATTCTATTTCAGGGCAACTCTGGACCTTTACAACTTGAACCTAATAAAACTGCATCACTTTATCTGGGCTAATTGGTTGTGTCTCCTGATGTGCTGCTGGAAAATAGAGCTCTGTCTTTGTATAAGGCCTGTCTGGGAGGGGCACTTCATACCGGCTGTTCTTCTCTCTCACATTTTGCTTCAGTAGTTCAGACAGACCACCATAGAAGTCGGTGGAAGAGTGTGGAGTTTATTGGGTCTGACCCCGCTTGGCTGAGCGTGCGTCTGATTGACTTTGTCCCTCCCCAGCTGTACTTTTAATCTGCATTCCTGTACCTGCAGAACTGGTCTGATCACCAAAACTGTAGTATCGACCCTTCTTCAGCCCGGTTCTGTCTCGGGTATTTGTTATTACGGTGACATCATTTGGCCGTCGCTGGCCGCTTCTCGGGCGTATGTAGAACAGGGCGAGCCGGAACGGGTCCCACGAGAGAAGGTGGGTTTGTTTGCAGGCAGGGACTGAAGTTCAAAGACGAGCGAGTCCACGGCTCAGTGCGCAACCTGCGGGACTGCGGGGAGACGGACTGCCGGTGAATTAATCCCCGAGAACTGATTCTGCGGCCCCGGTGTGGAGAGTGTCCCGGGTTTAACCGGTGCgtgagaggtggagagagatgCGGGGTGTGTGCCTCGTGTGTGCGCCAGGTGTGTTTGGTTTATGATGGATGTTTGTTCGCAGTGTATCAGGGTTGTCCAAGAGCTGTGTGCGTTGTGCATTGGGTGTGTGGGTGGAATAGAGTGCCATAAACAAACAGCTGTTAAAGAAAGGAAGAACGAAGTGTGTCAGGTCTGACAGTGCGTCTGTGAGAGACGCTCCAAGAGGCTGTTGCTGTTTGAGCAGGGAGTGACCAGAAACCTCCCCCACCATTGTGTGAGAAACAATGGAGCCTTTGTGATGCGGGGGGGGTATCGCTGGCGGAGGGACTCGGCCTGTGTGGGGGGTGCTCCGGGGCCTGCCTGCCGACCGGgtttcacagtttgtttttcttcctgcgCTCCCCCTCCAGGTAACAAGAAGCTCAAGTACATCAGCCTGGCCATCCTGGTGGTGCAGAATGCCTCGCTCATCCTCAGCATCCGCTACGTGCGCACGCTGCCCGGCGACCGCTTCCTCTCCACCACCGCTGTCGTCCTGGCTGAGGTGCTCAAGGTGCTCACCTGCCTGCTGCTCATCCTGGTGCAGAAGCGCGGGAGCGTGCGGGAGTTCGTGGGGCTGCTGTATGACGCCATCGTTGTGCAGTACATGGACACCCTGAAGCTGGCCGTGCCCTCGCTCATCTACACCCTGCAGAACAACCTCCAGTACGTGGCCATCTCCAACCTGCCTGCCGCCACCTTCCAGGTGACCTACCAGCTGAAGATCCTGACCACGGCTGTCTTCTCGGTGCTGATGCTGCGCAAGAGCCTGTCGCGGCTGCAGTGGGTGTCCCTGGTGCTGCTGTTCACGGGCGTGGCCATCGTGCAGGTGGAGCAGGAGGGCGGCCGCAAGGAGACATCGGTGGTGAGCGGCGGCCAGAACTACGGCATGGGCCTGGTGGCCGTGGTGGTGTCCTGCCTGTCCTCAGGCTTCGCGGGCGTCTACTTCGAGAAGATCCTGAAGGGCAGCTCGGCCTCGGTGTGGTTGCGCAACGTGCAGCTGGGCATCTTCGGCACGGCGCTGGGCCTGCTGGGGCTGTGGTGGAAGGACGGCCAGGCGGTGGCCGAGAGGGGCTTCCTGTTTGGCTACACCCCGCTAGTGTGGGGTGTCATCTTCAACCAGGCGTTCGGCGGCCTGCTGGTGGCTGTGGTGGTCAAGTACGCGGACAACATCCTCAAGGGCTTTGCCACGTCCTTCTCCATCGTAGTGTCCACCGTCACCTCCGTCTACCTCTTCGGCTTCCACGTGGACCTGTTGTTCACGCTGGGCGCCGGGCTGGTCATCGGAGCCGTGTACATAACCCGGAAGGTTGTTTTGTGTGGCGGCGTGTTGGCGGGACAGAACCGGTCTCTGGTGGAACGGCAGCACGAGTTTAGAGTCCGCATTCAGGAGGAAGATGGATTACAGTTAATCCCGGCTCAACAGAGCCTTCCTCGCCAGTACAGCACAGATGTTTAA

Function

GO:

id name namespace
GO:0015780 nucleotide-sugar transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005338 nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005351 carbohydrate molecular_function

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73281 lncRNA upstream 3978 44759277 ~ 44760058 (+) False AMCG00009706
TU73169 lncRNA upstream 280789 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 356468 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 373954 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 403974 44328271 ~ 44360062 (+) True G58513
TU73337 lncRNA downstream 124617 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 149815 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 153856 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 374947 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 426295 45194523 ~ 45198264 (+) True G58792
AMCG00009706 mRNA upstream 4224 44750176 ~ 44759812 (+) True AMCG00009706
AMCG00009708 mRNA upstream 17707 44738679 ~ 44746329 (+) True AMCG00009708
AMCG00009711 mRNA upstream 51948 44709839 ~ 44712088 (+) True AMCG00009711
AMCG00009701 mRNA upstream 97058 44660814 ~ 44666978 (+) True AMCG00009701
AMCG00009702 mRNA upstream 110288 44648016 ~ 44653748 (+) True AMCG00009702
AMCG00009709 mRNA downstream 646 44768874 ~ 44780968 (+) True AMCG00009709
AMCG00009712 mRNA downstream 88299 44856527 ~ 44881725 (+) True AMCG00009712
AMCG00009714 mRNA downstream 133198 44901426 ~ 44916843 (+) True AMCG00009714
AMCG00009715 mRNA downstream 159639 44927867 ~ 44933814 (+) True AMCG00009715
AMCG00009716 mRNA downstream 182445 44950673 ~ 44962284 (+) True AMCG00009716
TU73251 other upstream 112069 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 164708 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 193505 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 376072 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 828274 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 287837 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 739966 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 791749 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 986358 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069575 True 1252 mRNA 0.52 4 NC_007119.7 8947623 ~ 8957679 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_08725595_08733769.mRNA True 1837 mRNA 0.46 4 CI01000010 8724967 ~ 8733769 (-)