RNA id: AMCG00009708


Basic Information

Item Value
RNA id AMCG00009708
length 1017
RNA type mRNA
GC content 0.65
exon number 8
gene id AMCG00009708
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44738679 ~ 44746329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGCCGATCAAGTATATGGGGACCAGGACATGCACGATGTGGTCCGAAAGCACTGTATGGACTACTTGATGAAAAACGCAGATTACTTCTCCAACTACGTGACCGAAGACTTCACCACCTACATcaacagaaagaggaaaaacaactgCCATGGGAACCACATAGAAATGCAGGCCATGGCGGAGATGTACAACCGGCCGGTGGAGGTCTACCAGTACGGCACAGAACCAATCAACACGTTCCACGGCATCCACCAGAACAACGATGAGCCGATCCGAGTGAGCTACCACCGCAACATCCACTACAACTCCGTGGTGAACCCCAACAAGGCCACGATTGGAGTGGGGCTGGGCCTGCCCGCCTTCAAGCCAGGGGTGGGTACCGCCGGGCAGTACGCAGACCAGTCCCTCATGAAGAACGCCATCAAGACCTCGGAGGAGTCGTGGATCGAGCAGCAGATGCTGGAGGACAAGAAGCGGGCCACAGACTGGGAGGCCACCAACGAGGCCATCGAGGAGCAGGTGGCGCGGGAGTCCTACCTGCAGTGGCTTCAGGACCAGGAGAAGCAGGCGCGCCAGccccgGAAGGCCAGCGCGACCTGCAGCTCGGCGACGGCGGCGGCGTCCAGCGGCCCGGAGGAGTGGAGTGGCCGTTCCCCCCGGCAGCGCAGCTCTGCCCCCTCGCCCGAGCACCCGGAGCCCCACCCCGACGCGGCCGCCaagcccccctcccccgccgGGGCCACCGAGCCGGCGCTGCCCCCCTCGTGTCTTTGTACCCTGCGCTGGACAGGAGTACCTGGACAGCATGAAGAAGAGCGCGGTGCACAGAGCGCCCTCCCCCGACAGCAGCTGATATCCGGGGAGGGGGCCACACCGCCGCCGCCGCCCCAGCAGGACGGACAGACAGCGACCGCCACCACCGCCCGCCCCCCCGAGACCACCCTCCGGACGTCCGTCTGCCCCCCGtcccgccccgccccgccccgcccctcCGCAGCAGTACCATCATAA

Function

GO:

id name namespace
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K12655 OTUD5, DUBA; OTU domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73169 lncRNA upstream 255432 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 331111 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 348597 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 378617 44328271 ~ 44360062 (+) True G58513
TU73142 lncRNA upstream 413106 44325151 ~ 44325573 (+) True G58510
TU73281 lncRNA downstream 12948 44759277 ~ 44760058 (+) False AMCG00009706
TU73337 lncRNA downstream 146516 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 171714 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 175755 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 396846 45143175 ~ 45143472 (+) True G58776
AMCG00009711 mRNA upstream 26591 44709839 ~ 44712088 (+) True AMCG00009711
AMCG00009701 mRNA upstream 71701 44660814 ~ 44666978 (+) True AMCG00009701
AMCG00009702 mRNA upstream 84931 44648016 ~ 44653748 (+) True AMCG00009702
AMCG00009703 mRNA upstream 95908 44641950 ~ 44642771 (+) True AMCG00009703
AMCG00009700 mRNA upstream 135070 44598456 ~ 44603609 (+) True AMCG00009700
AMCG00009706 mRNA downstream 3847 44750176 ~ 44759812 (+) True AMCG00009706
AMCG00009707 mRNA downstream 17707 44764036 ~ 44768228 (+) True AMCG00009707
AMCG00009709 mRNA downstream 22545 44768874 ~ 44780968 (+) True AMCG00009709
AMCG00009712 mRNA downstream 110198 44856527 ~ 44881725 (+) True AMCG00009712
AMCG00009714 mRNA downstream 155097 44901426 ~ 44916843 (+) True AMCG00009714
TU73251 other upstream 86712 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 139351 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 168148 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 350715 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 802917 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 309736 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 761865 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 813648 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 1008257 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006835 True 1645 mRNA 0.46 9 NC_007122.7 25681341 ~ 25689754 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_08745022_08776416.mRNA True 3289 mRNA 0.51 16 CI01000010 8744752 ~ 8776987 (-)