RNA id: AMCG00009709


Basic Information

Item Value
RNA id AMCG00009709
length 1500
RNA type mRNA
GC content 0.63
exon number 11
gene id AMCG00009709
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44768874 ~ 44780968 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCCGCTCGCTGGATTGTGGCAGAATAAGCCCCGAGTCCATGTATGTGGCGTTGTCATGTGGCGTCGCCAGTTACTGGGGTTGCCAGAGAGCGCAGAGGGACACCCAGGCCTCGGCCTCCTCAGATCGCCTGCCCGTAGCCGCCGTCTCCCTGGACCCGGTACCTGGGAAAGGAGAAGGGCTGCTAACGCGAGGGTCTGACCCTGGGAACGGGGGGACGGCTGCCACCTCCCCACACCGGCTGCCACCACCCGGCGTGCCAAGAGACTCACGGCAGGAGGGAGGTCTGGAATCACACGCGTGCCTTACTGTGAAAGTGCAACTCCAGCTGCTCGGAGAAAGAGACACCCCTGGGGTTGGGGGAGGGTCTGGCCCGATCAAGTCCCGAAGTTCAAAACCGAATTCCcgggaggaggacaacccccTCCCCAGTCTCCTTCCTCGGTCTCCTCCTCCAAAATCTGTGACCCTCCCCCTGGTGACTGAGATCCGGGAGACTCCACAGCCCCCTAACGGTTTCCTCTCGGCCCCCAAGACCAGATTCCCGCCCCGCAGTGAGAGCATGAGCCACAAACGGGGCCTCTTGGACTCCCCTTCGTCTCGAGCCTGGTCTTCAAGGGGCCTCGGTCTGGGGCCCCTTCGTGACGCTGTGAATGTGAATCCAGGCTCCGTTGACTGGCAGGACTCGTTcggatctctctctcttgtgaCATTCGACTCTTCGAATGGCCGGGCCGaCCAGACAGCCGTGACGATGAGCCTGCAGTGGACCGCGGTCGCCACCTTCCTGTACGCGGAGGTCTTCGCCacgctgctgctgtgtgtgcccTTCATCTCCCCCACCCGATGGAATAAGATCTTCCGCTCCCGGCTGGTCAAGGCCATCATGACTTACGGCAACACCTACTTCGTGGTGCTGATTCTGATCCTGGTCTTCCTGCTGATCGaCGCCGGGCGGGAGGTGCGCAAGTACAGCGTGACGGAGAAGGTGGACCTGACGAACAACCCCACGGCGGTGGAGCACATCCACATGAAGCTGTTTCGCGCCCAGAGGAACCTCTACATCGCCGGCTTCGCCCTGCTGCTCTGGTTTCTGCTGCGGCGCCTGGTCACGCTCCTGTCCCAGCAGGCCTGCATGATCGCGTCCAACGAGGCCTTCAAGAAGCAGGCCGAGGGGGCCAGCACCGCTGCCAAGAAGTACATGGAGGAGAACGAGACCCTGCAGGAGACCCTCCGGGAGGCCGGCATCGCCGCGCCCGAGGCCGGGAAGAAGGCGGGAGGGAGAGCGGGAGTGGAGGAGGAGAACAAGAAGCTGAAGGGAGAGGTGCACCAGCTGAAGGACGAGCTGGACACCACCAAGAAAGCGCTGCAGAAGTGCGAGGGTGACGTGAAGGCCATCAAGAAGCAGGCCGAGAACCTGACCCGGGAGTACGACCGCCTGCTGGACGAGCACTCCAAGCTGCAGGTCAGTGCCCACCCCGGGGCCACCGGACAGTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14009 BCAP31, BAP31; B-cell receptor-associated protein 31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73281 lncRNA upstream 8816 44759277 ~ 44760058 (+) False AMCG00009706
TU73169 lncRNA upstream 285627 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 361306 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 378792 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 408812 44328271 ~ 44360062 (+) True G58513
TU73337 lncRNA downstream 111877 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 137075 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 141116 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 362207 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 413555 45194523 ~ 45198264 (+) True G58792
AMCG00009707 mRNA upstream 646 44764036 ~ 44768228 (+) True AMCG00009707
AMCG00009706 mRNA upstream 9062 44750176 ~ 44759812 (+) True AMCG00009706
AMCG00009708 mRNA upstream 22545 44738679 ~ 44746329 (+) True AMCG00009708
AMCG00009711 mRNA upstream 56786 44709839 ~ 44712088 (+) True AMCG00009711
AMCG00009701 mRNA upstream 101896 44660814 ~ 44666978 (+) True AMCG00009701
AMCG00009712 mRNA downstream 75559 44856527 ~ 44881725 (+) True AMCG00009712
AMCG00009714 mRNA downstream 120458 44901426 ~ 44916843 (+) True AMCG00009714
AMCG00009715 mRNA downstream 146899 44927867 ~ 44933814 (+) True AMCG00009715
AMCG00009716 mRNA downstream 169705 44950673 ~ 44962284 (+) True AMCG00009716
AMCG00009719 mRNA downstream 185911 44966879 ~ 44969079 (+) True AMCG00009719
TU73251 other upstream 116907 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 169546 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 198343 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 380910 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 833112 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 275097 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 727226 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 779009 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 973618 45754586 ~ 45755115 (+) True G59084

Expression Profile