RNA id: AMCG00009711


Basic Information

Item Value
RNA id AMCG00009711
length 2250
RNA type mRNA
GC content 0.68
exon number 1
gene id AMCG00009711
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44709839 ~ 44712088 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCACCATGGGCGGAGCTGCGATGGCTCTGTGGCTGCTGGCGGCCGCCCTGGCGCTGTGTCTCTGCCGCTCCTCCCCGACCGGCGAATCCTGCCCGCCGCAGTGTGTGTGCGAGACCCGGCCCTGGTACACCCCACAGTCCGTGTACCACCAGGCCAAGACGGTGGACTGCAACGAGCTGCAGCTGAGCCGGGTGCCCTGGGGCATCTCGGGCGACACCcaggtgctgctgctgcagagcaACAACATCTCGGCCGTGAGCGCAGAGCTGCAGAGCCTGGTCAACCTCACCGAGCTGGACCTGTCCCAGAACCACTTCGCCACCGTGCGAGACATCGGCCTGTCCAACCTGAGCCAGCTGATCACGCTCTACctggaggagaaccaggtgaagGAGCTGCCCGACTTCGGTCTGAAGGACCTGGCCAGCCTGGAGGAGCTCTACATCAACCACAACCAGATCTCCACCATTGGCCCGCAGGCCTTCGCCGGGCTGGGCAGCCTGCTGCGGCTGCACCTCAACTCCAACCGACTGGTCTCCATCGACAGCCGCTGGTTCGAGTCCCTGCCCAGCCTGGAGATCCTGATGATCGGGGAGAACCCCATCCTGGACCTGCAGGACCGGAACTTCCACCCCCTGTCCAAGCTGCACAGCCTGGTGCTGGCCGGCATGGGGCTGCGGGACGTCCCTGCCGGGGCCTTCGAGGGCCTGGACTACCTGGAGAGTCTGTCCTTCTTCGACAACCGGCTCCCCGCCGTCCCCAAGGAGGCGCTGCGCGTCCTGCCCAACCTCAAGTTCCTGGACCTCAACAAGAACCCTGTGGGCCGTGTGCAGGAGGGCGACTTCCGGGACTTCCTCCACCTGGAAGAGCTGAGCCTGAACAACATGGAGGAGCTGGTGGCCATCGAGAGGGGCGCCTTCGCCAACCTGCCCGAGATGGCGAAGCTGGAGATCCGCAACAACCCCCGGCTGTCCTACATCGACCGCAGCGCCTTCCTTGACCTGGCTGCCCTGCGCACCCTGCTGATCAGCAACAACGACCTGAGCCTGCTGCCCCGAGAGCTGCTGGCCGCCTTCCCCAGCCTGGACGAGCTGAGCCTGCACAGCAACCCACTGCGCTGCGACTGCCTGCCCACTTGGGCGGCGCTGGTGGGGAACCAGTCCACCCTGCGGCTGCTGGAGACCCAGATCACCCTGTGcgcctcccccccccacctgaGCGGCCGCGCGCTGCAGGACGTGGTCACGGCCGCCTGGAGCCCCGGCAGCAACTCCTGCCTGCCCCTCATCTCCCAGCACGCTTTCCCCCCCCAGCTCAACGTGTCGGCCGGGCAGCCCCTCACGCTGGACTGCTGGGCCATGGCCGACCCAGCGCCCCAGTTCTATTGGGTCACCCCCACAGGGGACAAGGTCACGTCGGAGGCAGACGCTCCCCCGCCCCTGTCTCCCGGCCGGAGGCACCGGCTGCAAGAGCTGGGCGCGCTGGAGATCCGGGCGGTGGAGCCAGCGGACGCAGGGCTGTACACCTGCGTGGCGTGGAACGCAGAGGGCGCCGACACCCGCAGCGTCACCCTGCGCGTGGACCGGGGCGAGGGGGGCGATGGCGGCGGCGCGGCTGTGGAGCCGGGCCCGGGAAACGCCACAGTGGGGGGCCTGGTGATCCTGGCCAAGGTGGTGCACTCGCGCTCCGTGGTGCTGGAGTGGAGGCTGGAGCCCCCGGCATCCGGCGCCCCCTCCGGCCGCCCGGTGCCCCAGCCCCGGTGGGCGGCCGCCACGGTGAAGATTGACAACCCCCAGATCAGCTACACGGCCAAGGTGCCGGTGGACATCCAGGAGTACAACCTGACCCACCTGCTGCCCTCCACGCAGTACGAGGTGTGCCTGACCGTGTCGGCCCCCTCGGAGCAGCACAGCCAGCGCTCCTGCATCAACGTCACCACAAAGGAGGCCGCCTTCGCAGTGGAGATGGTGCCGGAGCGCTCCAGCGTGGCCCTGGCTGCCGTCATGGGCTCCATGTTCGCCATCTGTATCATGGGCCTGCTGGTGTTCTACATGGGCCGGCGCATGCGGCAGAAGGCCTGCCACCACTCGCTGAAGAAGTACATGCAGCACGCCACCTCCATCCCCCTGAACGAGCTCTACCCGCCGCTCATCAACCTGTGGGAGAGCGAGGCggagaaagagaaggagtgCGCCCTGGACACGCACAACCCCCAGATAGACACGTCCAAGACATACATGTGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73169 lncRNA upstream 226592 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 302271 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 319757 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 349777 44328271 ~ 44360062 (+) True G58513
TU73142 lncRNA upstream 384266 44325151 ~ 44325573 (+) True G58510
TU73281 lncRNA downstream 47189 44759277 ~ 44760058 (+) False AMCG00009706
TU73337 lncRNA downstream 180757 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 205955 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 209996 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 431087 45143175 ~ 45143472 (+) True G58776
AMCG00009701 mRNA upstream 42861 44660814 ~ 44666978 (+) True AMCG00009701
AMCG00009702 mRNA upstream 56091 44648016 ~ 44653748 (+) True AMCG00009702
AMCG00009703 mRNA upstream 67068 44641950 ~ 44642771 (+) True AMCG00009703
AMCG00009700 mRNA upstream 106230 44598456 ~ 44603609 (+) True AMCG00009700
AMCG00009694 mRNA upstream 141939 44561777 ~ 44567900 (+) False AMCG00009694
AMCG00009708 mRNA downstream 26591 44738679 ~ 44746329 (+) True AMCG00009708
AMCG00009706 mRNA downstream 38088 44750176 ~ 44759812 (+) True AMCG00009706
AMCG00009707 mRNA downstream 51948 44764036 ~ 44768228 (+) True AMCG00009707
AMCG00009709 mRNA downstream 56786 44768874 ~ 44780968 (+) True AMCG00009709
AMCG00009712 mRNA downstream 144439 44856527 ~ 44881725 (+) True AMCG00009712
TU73251 other upstream 57872 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 110511 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 139308 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 321875 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 774077 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 343977 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 796106 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 847889 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 1042498 45754586 ~ 45755115 (+) True G59084

Expression Profile