RNA id: AMCG00009713


Basic Information

Item Value
RNA id AMCG00009713
length 5151
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00009713
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44789130 ~ 44808487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCACCAACTGCCCTGTGTCTCTCCGCCCCGCCAGGCCTGGGCTACGCCTCGATGGTGATCGTGTTCTTCTGCAACACCTACTACATCATGGTGCTGGCCTGGGGCTTCTACTACTTCGTCAAGTCCTTCAGCGCCACCCTGCCCTGGTCGACCTGCGACAACCCCTGGAACACGGACAGCTGCATCGAGATATTCCGGCACGATGAGTGCCACAACGGCACCATCGGCAACGCCACCTTCGGCAACATGACCTGCGAGGAGCTGGCTAACGGCCGCTCGCCCATCATCGAGTTCTGGGAGAACAAGGTCCTGAACATCTCGGAGGGGCTGGACTACCCTGGCTCCATGAACTGGGAAGTGGTGCTGTGTCTCCTCGCCACCTGGGTCATCGTGTATTTCTGCGTGTGGAAGGGGGTCAAGTCGACAGGCAAGatcgTGTATTTCACTGCCACCTTCCCATACGTGGTGCTGATCATCCTGCTGGTTCGCGGCGTGACGCTGCCTGGCGCCTACGACGGGATCATGTACTACGTGAAGCCCAACTGGTCCAAGCTGGGCGAGGCGCAGGTGTGGATCGACGCAGGAACTCAGATTTTCTTCTCCTACGCTATCGGGCTGGGCGCTCTCACAGCCCTCGGCAGCTACAACCGGTTCAACAATGACTGCTACAAGGATGCTTTCATGCTGGCTCTCATCAACAGCGGCACCAGCTTCTTTGCCGGCTTCGTGGTGTTCTCCATTCTGGGATTCATGGCTTCGGAGCAGGGGGTGGACATCTCCCAGGTGGCCGAATCAGGGCCCGGCCTGGCGTTCATCGCGTATCCCAAGGCCGTCTCCCTGATGCCCGTGGCTCCGCTCTGGGCGGCActtttcttctttatgctgCTGTTGTTGGGACTGGACAGCCAGTTTGTAGGGGTGGAAGGTTTTGTCACTGGGATGATGGACCTGTTGCCCGAGAAGTATTACGTGCGCTACCGGCGAGAAATCTCAGTGGCCATCTGCTGTCTGCTGTGCTTTATAATCGACCTCTCTATGGTGACGCAGATAGCTCGGGGCGTCGGCTCTGTTCTGTCCGTGTCGCCGAGTCAGGTGCGTCTGGTGAGGGGAGGCAGGGATGAGGAGAGACACTTGGCGGGCCGCTGTGTCCAGTCTAACGCGCCTGGCCGCCTGTGCTCCGCAGGTGCTGACCGCTTCATGGACGACATCGCTCGGATGATCGGGTACCGGCCTTTCCCCTGGATGAAGTGGTGCTGGTCCATCATCACCCCGTGCGTCTGCATGCGCTGGGACCACCTGACCAAGCCCGTGTGGGGGGCCCACCACCTGGAGTACATGGCCCCTGACGCCGATCTCAAGAGCCTGTCATCGCTCTCGCCCGGCTCGGAGGAGAACAAGGTCATCATCTTCGAGAGTGTCATGTAGGACGCCGGCCAGCTTCAGGGGCAGCTTCCGTACTGCGTGGTAGTCTTCACCTGTCACCCGTTTCCCCACAAACTGGCAGAATTCTCACAGGcagcacatgcacatgcacacacactgcagcggTACGGGAAGGACGTCCGCACGAACGTATACTCCGTCAGGAATCAGTTTCATAAATCTGTGCTTTACGCAAaattttaaaaacttaaaattttaaaaaacttaaaattttaaaaacacaattttaaaaacacaattttaaaaatgcaaaacctttaaaacacaatttttgtattttttcgtAGCCTATTCATCGATGTGAACTTCCAAACTGAAATATCAATCAAACCGATACTTACACAAATAATGCATCTGTGAGATTTATGAAACTCATTCCTGATTTGCAGCTTTTAAACGTTTTTACCGAAGtatttagaaaacacaaaaacgaCACGCGCCTGGAGGGCGGACTCGAGGGGTTGCGAAtgccagagagagaaaaataaatatcaaatagcCTTCATAGTTTTTTTTGCCTTCGTTCTTCAGCACCCAGTCCGGGGATTTGAGTCCCAGGTGTGTCCCGTGGACTCGCAATACCCAGACGATCATATTCAACAGGTTGGTTTGAGACGGACGGGGAATAAATACGTATTTTAGTTCTGAATGCTTTGAATGTGTGCGGGGGTGGGGATTAGAAGCAATAACCAGAAGTTGCCAAAATTGTACATGTCTCAAAAGCACTCCACGGAAAGAAAGCAAAATTGTTTTTacttgcacttttattttatttttattctaatttgAGGCACGTGTCTCTTTAAATCTGCACAAACACAAGGAACAGAGCCGGACCTGAAGTCTGCGCATTGATGGTCCGGCGGCCGTGCCAACATTGGACAGGAGTCGCACAAATCAATAACCGGCCCGGCTCTCGGTGGAGATCAGACCTCGGATGCCAGAGTCGCGCGCTTTAGTGCCACCGGGCCGAGGGTCTCAGACTCACCTGTAGCCAGTGACACTATTGAAGATAAACACAgaacacgcacacagacacacacgcactgatAAACAAAgaacatgcacacaaaacacacacacacacccacacagacacacacacacatagacaaacacacacacacacacacacacacacacacaatgtgctCCTCCTAGTGCCTCACACTTAGTCTGACGGACACTTGGCCTGCTGTGACAGAGAAGTCCAGGTGACGGTTTACAGATGAGAAAACGCTAAACCTTgcctttgtttgtctgtcttattttgttttatttcgatttttatttgtattaattgtattattcttattgaaAGCCAGCACTGAGCATCGGAGCGGTGTTTGGTAGCCTTTAGGACCCCAGGGGTCTGCCCTCCAGGATTGCCTGTCAGAATTCTGCCACGTGTGACACGCCAGTTTACACATCAATcactgcaacaaaaaaaaagaaaaataagagaacatttaaaaaaaagaatgtgaatTAATAGGTAAAAAGAATAACGCAAAGGCTGAACTACATTTGCACATTGTTGTAAAATAATCTTGCTAGCACCTTAACTGTGTTAGAACAAGagggttattttcttttttgttttacttcctgtaaaataaatgagagatttattttgtgaatggttttattttgctgacatttaagatatatatatacacatatctatatatacacatatataaatatgtatatatgtatgtatatatatataaatgagtgtGACGTGATATGCTACAATGAAGACAGCAGGATGTCGCCCCGTGCAATAGGCTGCAATGCAGTGTTAGTATTAACGTGGTGGGAGAGACTGTGGGAATTGTGAATATGAtctgtgggggggtggggggtgctgcaGTGATGTGACAGAcctcctgtgtgtgtctgtgtgagtgtgtgtgtatcgctTGCCCCGGTCCACCCAGAGCCACACCTGTCCTCCCGTCCGGCCAGTCAGGGCCAGTCCTCCTTCGCTGTGTGTTACTTCATTCGAGAGTCACATATCTGGACCCCCCGTGTTGCCCTTCGTCCTCACCGGGGTGTTTGTGATTTGAAATTAAGAAAGACAGTTATCAACAAGAGCTCGATTTTAGTAAACCctaataatgataacaaaataacaataataaaaataataacaacaacaaaaagttaaAGGAAGGACCAGGGCATGACATATGGTTGGTAGAAGCTGTccttctgtccctctgtcccagTCCTGTCCACCGGGAGTTTGAGTCCCACTGCGCCTTTAACAAAGCGCAGGTCTGGCCAGTACCGGTCAGACTCCGCCGCACTGCCCGCCCTGGTGCAATGTCTCACACTGCCCATATGTGAGCCGTCCCAGCAGAACACACTGacattaatcatcatcatcgtcattgGTCCGAAACTCTCCATTTCACGCCTCTTCTCCCTGGCCTGGGTTGGCTGGCTGGCAAGTGACttgggaaaatgtaattattataaatatattttttaaaagaaaggaaatacaCTCTATTATGTGAAAACCATGTGTATTGTTTCATTCTGTTGTACTTCTGACTGCCAAATCGTTCAGACTGTATCCTGTATCCAAGGGGAGCCCTAGTCTCGGCACGAAACCCGGCCTTCGCAGATCTTTCACAGTGTCGTAGCTCCGAGCCGGCCTGACGAGCAGCTTTTTAATCCAAATATTCTGCGTTTTCACTGTGAGAGACTTGAGGGATTAGTATTAACACTTTCTGAAATATATCAGTTAAATCGCAATCAGTGCAGCTATCTACTTttttgaactgtttttaaaagcaggagATCGAAAACCACATGTGAGTATTTTTATGTGCTTTTAAttcaaatagtttattttcctaGTTAGAAATGCCGTTCTGATCTGGAACCAAAACGAACACCAGACGGAGGGAACAGATCACCATCCAGGTGTTTGATTTCCCCTCAGTGTTCACTTCCCGCCAGAAAGAAAGACGGGAATGAAAATTAAAGTCCTTTTCAGTGTCTAAGGATGGCAGGAGCAAATTCCCCTCCTTGGCCAGAAGTGACTGAAACGCTTTGCTCAaggcctccctccctctctctctccctctctctctctctcccttcctctctctctccctccctctatgCAATGTGATGCTCGCTATTCAAAACCGTAAACAGACCAGAACAAACCCACACAATCCTTTGTCTTATGGAAGATTTGTCTGCGGATCTCTCCTGTCttacctgtctgtctgctgcGTTTAGTTTGAACGCagggttttgaaaatggaaatcGAATACTAATCATGAAATAAACACTAAAACACACCTGGCAGGGACGGCTGTTGGGAAAAACCCACCGCAGAGAAGCGCGTCCGACGCGGCGGCGGCCCCTTGGACGAGGATACGGTCTGAGAGCAATTGCAAACGTGATGTTGTCCATGGCTTCCCTGCTGCCCCTCCTCTGTGCTCTAGTACCCTGTTCTAGTACCCGTGTTCCCGCTGTGAGACGCAGCGCGGTGGCACCTAGTCTTCCATTCACGATGAGATAGTAGTAAGTAATAACGGTGAGACGGAGCCAAGCAGTGTGTTCCATGGCCGTGACCTCCGCGTGTGCAGAGGGCTCCATGCTTGATCACCGCTGTGACTGTGCGCTGCAATCACTCTGAACCCGCGTCACAACATGGCAATAAAACCCAGTTAACTCA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05041 SLC6A8, CT1; solute carrier family 6 (neurotransmitter transporter, creatine) member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73319 lncRNA downstream 2358 44785604 ~ 44786772 (-) True G58654
TU73265 lncRNA downstream 123799 44665122 ~ 44665331 (-) True G58613
TU73264 lncRNA downstream 124185 44664738 ~ 44664945 (-) True G58612
TU73263 lncRNA downstream 126797 44661881 ~ 44662333 (-) True G58611
TU73256 lncRNA downstream 130032 44658416 ~ 44659098 (-) True G58605
TU73386 lncRNA upstream 84305 44892792 ~ 44893083 (-) True G58699
TU73394 lncRNA upstream 108144 44916631 ~ 44916889 (-) True G58707
TU73413 lncRNA upstream 189545 44998032 ~ 45000234 (-) True G58724
TU73456 lncRNA upstream 281730 45090217 ~ 45119224 (-) True G58761
TU73509 lncRNA upstream 360454 45168941 ~ 45230457 (-) False AMCG00009739
AMCG00009710 mRNA downstream 95597 44682664 ~ 44693533 (-) True AMCG00009710
AMCG00009705 mRNA downstream 131406 44656044 ~ 44657724 (-) True AMCG00009705
AMCG00009704 mRNA downstream 134516 44653851 ~ 44654614 (-) True AMCG00009704
AMCG00009697 mRNA downstream 277028 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009691 mRNA downstream 434377 44346470 ~ 44354753 (-) True AMCG00009691
AMCG00009718 mRNA upstream 113602 44922089 ~ 44927038 (-) True AMCG00009718
AMCG00009717 mRNA upstream 161475 44969962 ~ 44976755 (-) True AMCG00009717
AMCG00009723 mRNA upstream 222430 45030917 ~ 45032715 (-) True AMCG00009723
AMCG00009725 mRNA upstream 234359 45042846 ~ 45046433 (-) True AMCG00009725
AMCG00009724 mRNA upstream 249187 45057674 ~ 45087487 (-) True AMCG00009724
TU73318 other downstream 3996 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 222296 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 246321 44541894 ~ 44542809 (-) True G58584
TU73231 other downstream 276881 44508253 ~ 44512249 (-) False AMCG00009697
TU73015 other downstream 793476 43989511 ~ 43995654 (-) True AMCG00009672
TU73631 other upstream 512356 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other upstream 512356 45320843 ~ 45323322 (-) False AMCG00009748

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042674 True 804 mRNA 0.52 4 NC_007134.7 6795709 ~ 6813439 (+)
bowfin (Amia calva) TU90378 True 200 lncRNA 0.38 1 CM030128.1 28655566 ~ 28655765 (-)
tiger barb (Puntius tetrazona) TU90378 True 3459 lncRNA 0.39 2 NC_056706.1 4432998 ~ 4436499 (+)