RNA id: AMCG00009718


Basic Information

Item Value
RNA id AMCG00009718
length 1846
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00009718
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44922089 ~ 44927038 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGGGCCGGAGCTGCTGCTGGACTCCAGTATCCGCCTCCAAGTTTTGCTTCGAAGCCGCATTTTGAGAGAGAATGGCAAATACATCCCCAAACAGTCCTTCGCGATGCGGAAGCAGTACTTCAACGACCCGGAGACCGGCTTCTTCAAGAAAACCAAGAGGAAGGTGGTTCCCAAAAACCCCATGACAGACACCAGCATGCTGACCGACATGATGAAGGGCAACCTGACCAACGTGCTGCCCATGATCGTGATCGGTGGATGGATCAACTGGGCTTTCTCGGGGTTTGTGACCAcGAAGGTGCCCTTCCCTCTCACCCTGAGGTTCAAGCCGATGCTGCAGAGGGGCATCGAGCTGCTCTCTCTGGACGCCTCCTGGGTCAGCTCTGCGTCCTGGTATTTCCTGAACGTCTTCGGACTGCGCAGCATGTACAGCCTCATTCTGGGCCACGACAACGCTGCCGACCAATCACGGATCATGCAGGATCACATGACCGGCGCAGCCATGGCGATGCCCCCTGACCCCAACAAGGCCTTCAAGAGCGAGTGGGAGGCCCTGGAGATCGTGGAGCACCAGTGGGCCCTGCAGAACGTGGAGGAGGAGCTCATCTCCCGAGACCTCAATTTTGGGGGCTTCTTCAGCCGGGAGGTCAAGACAGCCATGTTCTGAGTGGAGAACCAGACAGCCCCCCCGCAACAGCCTTCAACGTGTCACTGCAGCTCtggctggggggagggggttctcGATGGCAGCTCTCTCTCCCCACTTCTCTGTATCTCCAGTCTTTTTTAGCAGGTTTGTGTggttgttgggggggggggttgtgctcACGTTTGGTGACGTCACTCGTTGACAGTTAGGATCGGAGGAAGTGATGAAACCCCCAGTACGAGGATCTGTCAgtgtcttttaatgtttttaatgcaaatgtccAGATGTGATCTCTCTCAACACACTGTTGCCTTCgttgcccccccacccttccaCTCCGTCCCGTCTCACAGGCTGAAGCGTCACACACCTTCTCTacaccaggggttttcaaaccggtcctggagtaccccctgccctgctggtttttgttccaacttaattgcttaattgacctaacaaagcaatataccattcaattaagtaattaagacctcggttggaacaaaaaccagcagggcagggggtactccaggaacggtttgaaaacccctgctctacACCATCTGCCTTTGATTGAagcatgttttatataatattaagtGACACCCCAGGCCCATAGTCTCTTTCTTCTACCCTTTCTCCTAAAATCTAacctccccccacacactctctctattTGATGGTAACTGTGCTGTTTTGGTGTGAATCCACGCTCTCTCCAGTTTGTTTCCAATAATTATTTCAGTGCCTCCCGCAGGTTTTGCTCATGGGCTGAAATGAGCCCACGTTACATGTGACATGCATGTGTAAATGTACAGCCGAAGTGTCTCCCaaacccccccccactccattttttttctaaaaccaaGTAATATTAGTAAGTGTGTACATTTACACTGAAGAGCCTGACTGTGAAAAACTCTGTTGGGCCCAGTGTCTCCCTTGCAAATGTTACGGCCTAGACTGTGTAAAAGGATCTGGACTGGGGTTGGGGAACGACAGGTTTGTTGAAGGGGTCTTTGCACAGAGAGTGGCGGGGGCAAGCCggtttatttgtgtattctCTGCCTGTTCAGTCCCGATGATGATACTGATTAGAAGGGGGTGGGCCGGGAGTGTGAGTCCAGCAGGTTGGGGGTTGTGTGCCTGCCTGGAGAAGAGATTTTGTGATGAATAAAGTCTATTTATT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73394 lncRNA downstream 5200 44916631 ~ 44916889 (-) True G58707
TU73386 lncRNA downstream 29006 44892792 ~ 44893083 (-) True G58699
TU73319 lncRNA downstream 135317 44785604 ~ 44786772 (-) True G58654
TU73265 lncRNA downstream 256758 44665122 ~ 44665331 (-) True G58613
TU73264 lncRNA downstream 257144 44664738 ~ 44664945 (-) True G58612
TU73413 lncRNA upstream 70994 44998032 ~ 45000234 (-) True G58724
TU73456 lncRNA upstream 163179 45090217 ~ 45119224 (-) True G58761
TU73509 lncRNA upstream 241903 45168941 ~ 45230457 (-) False AMCG00009739
TU73521 lncRNA upstream 257323 45184361 ~ 45250020 (-) True G58808
TU73514 lncRNA upstream 292591 45219629 ~ 45241933 (-) True G58807
AMCG00009713 mRNA downstream 113602 44789130 ~ 44808487 (-) True AMCG00009713
AMCG00009710 mRNA downstream 228556 44682664 ~ 44693533 (-) True AMCG00009710
AMCG00009705 mRNA downstream 264365 44656044 ~ 44657724 (-) True AMCG00009705
AMCG00009704 mRNA downstream 267475 44653851 ~ 44654614 (-) True AMCG00009704
AMCG00009697 mRNA downstream 409987 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009717 mRNA upstream 42924 44969962 ~ 44976755 (-) True AMCG00009717
AMCG00009723 mRNA upstream 103879 45030917 ~ 45032715 (-) True AMCG00009723
AMCG00009725 mRNA upstream 115808 45042846 ~ 45046433 (-) True AMCG00009725
AMCG00009724 mRNA upstream 130636 45057674 ~ 45087487 (-) True AMCG00009724
AMCG00009732 mRNA upstream 186395 45113433 ~ 45114885 (-) True AMCG00009732
TU73318 other downstream 136955 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 355255 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 379280 44541894 ~ 44542809 (-) True G58584
TU73231 other downstream 409840 44508253 ~ 44512249 (-) False AMCG00009697
TU73015 other downstream 926435 43989511 ~ 43995654 (-) True AMCG00009672
TU73631 other upstream 393805 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other upstream 393805 45320843 ~ 45323322 (-) False AMCG00009748

Expression Profile