RNA id: AMCG00009721


Basic Information

Item Value
RNA id AMCG00009721
length 2094
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00009721
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45005169 ~ 45031780 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCACACGACTGGCTATTTCTGAGGCTGACATGGATTCATTTCGAGGAAGCGCTGGGGTTGTTCCTGGGCGACTGGGCTGTGAAGAGAACCTGCTCTGGGAAAGTACCATTTCATTCCTCAGTGCCTCGAGAGGAATCTGCAAACACAAAATCCACTTCATCAGACTGGTGAACGGGCACAATAACTGCTCCGGCAGAGTGGAGGTCTATTACAACGGACAGTGGGGGACGGTGTGCGACGATGGCTGGGGGGTGGCTGATGCACAAGTGGTGTGCCGGGAGCTGGGCTGTGGGGTCGCCCTGTCAGCTACGACCCATGCCCAGTTTGGACAGGGCTCGGGCAATATCGCTCTCGATGACGTGGCCTGTGTCGGGACAGAAACGTCTCTCCTGAACTGCCCCGCAGCAAACCTGGGGAGCAACAACTGCGATCACTCGGAAGATGCCGGCGTCGTCTGCTCAGAGGGGACACGTGTGCGACTGGCGAATGGCTTCAATAACTGCTCAGGGAGAGTGGAGGTCTACCACGCAGGGACCTGGGGCACGGTGTGCGATGACTGGTGGGTCATTGATGATGCCGAGGTGGTGTGCAAACAAGTGGGCTGTGGCGCAGCCATCTCGTCTACTGGGAGCGCCTGGTTTGGGGAAGGCAACGGCCCAGTGTGGCTCAACGATGTGCGATGCATGGGGTCTGAACCCTCACTGCTTGACTGCAGTTCGGCAGGCCTGGGCTCTCAGCGCTGCACGCACGCTGAAGACGCTGGGGTCATCTGTGCAGTGAGCCAAAGTGTGCGCCTGGCTGGAGGCAGCAGCTGCTCTGGGAGAGTGGAGGTGAGGGTGGGCGTTTGGTGGGGGACAGTGTGTCACAACGTGTGGGACTTGACGGACGCTGAAGTCGTCTGCAGACAGCTTGGGTGCGGCAGCGCTCTGTTCGCCCCTCTATACTCAGCCTACGGCCCCGGCACTGGACCGGTTCTCATGGGAGGTGTTGGCTGCACTGGTGACGAGGACTATTTGCTAAACTGCAGATACACTGGCCCTGGATTAAACTACTGTGATCATTTTACTGACGCCAGTGCAGTATGTTCAGAGGGACAAAAAGTCAGGTTGGTCAGTGGGAACAACAACTGCTCTGGCCGAGTGGAGGTCTATTACTACGGCCAGTGGGGGACGGTGTGCGACGACGGCTGGGACACAAGGGACGCCCAGGTGGTCTGTAGAGAGCTGGGCTGCGGCGACGCTTTATCTGCCCCTATGAAAGCCGCATTCGGGGGAGGGACCGGCCCAATTCTGTTAGATGACGTCCACTGCACCGGGAACGAGATGTCCCTGCTGAACTGCCTGGCCAGCAGACAGACAGCTCGCAACTACGCCAGCGTGGTGTGTTCAGCCGGTCCCAGAGTCCGCCTGGCCGAGGGGAACTCCAGCTGCTCGGGCAGGGTGGAGGTGTACTACGCCGGCCAGTGGGGCACGGTGTGCGACGACAGCTGGAATATCCTCGACGGGGACGTGGTGTGCGGAGAGGTGGGCTGCGGCCGGGCCCTGGCGGCGCCGGGCTGGGCCGAGTTCGGGATGGGTATCGGCCTCATCCTGCTCGACGACGTGCAGTGCCTTGGCACCGAGGCCTCGCTGTTCGACTGCCCGGCCACACAGCTGGGCTGGCACAACTGCCACCACATCGAAGACGCCAGTGTGGTGTGTTCAGatgcacagagagaaagacactaCTGTTTCAGAGAGATGGGGTTAAAAATCAAAGACTGTGGAGTGGACACTGTGGGGAAGATGGGTCTGGGAATCGGCGAGGATGTTTACCGCGTTGGCAGGAAAGGCTCGCAGCATCACGGCACTGAAGCCCTTGTACAGGGAGCGCAGGCCTTCATCTCTCATCAGCTCACGGAGCACGTCCCGGAATCCAGAAACATCCTACCTGTCTGGGTGATGGACTTGAGGACATCAACGGGTATCGCCCAGTTACAGATGCCCGCCATGCCCCCAGCAAAGAAGATTCTGGGAATGCTCAGCTCGTTGACGCTGAAATCCAAACCGGTGGAAAGATCAGTCTTCTTCAACCCAACTGTGCTCACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73340 lncRNA upstream 81469 44922084 ~ 44923700 (+) True G58668
TU73326 lncRNA upstream 83532 44918043 ~ 44921637 (+) True G58660
TU73337 lncRNA upstream 112091 44892845 ~ 44893078 (+) True G58666
TU73281 lncRNA upstream 245111 44759277 ~ 44760058 (+) False AMCG00009706
TU73169 lncRNA upstream 521922 44413272 ~ 44483247 (+) True G58527
TU73472 lncRNA downstream 111395 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 162743 45194523 ~ 45198264 (+) True G58792
TU73541 lncRNA downstream 235159 45266939 ~ 45275033 (+) True G58825
TU73548 lncRNA downstream 244708 45276488 ~ 45277596 (+) True G58830
TU73535 lncRNA downstream 298004 45329784 ~ 45332856 (+) True G58822
AMCG00009726 mRNA upstream 1597 45001138 ~ 45003572 (+) True AMCG00009726
AMCG00009720 mRNA upstream 7161 44989273 ~ 44998008 (+) True AMCG00009720
AMCG00009722 mRNA upstream 20332 44975660 ~ 44984837 (+) True AMCG00009722
AMCG00009719 mRNA upstream 36090 44966879 ~ 44969079 (+) True AMCG00009719
AMCG00009716 mRNA upstream 42885 44950673 ~ 44962284 (+) True AMCG00009716
AMCG00009730 mRNA downstream 57423 45089203 ~ 45093238 (+) True AMCG00009730
AMCG00009728 mRNA downstream 73756 45105536 ~ 45111832 (+) True AMCG00009728
AMCG00009727 mRNA downstream 83883 45115663 ~ 45119186 (+) True AMCG00009727
AMCG00009731 mRNA downstream 103644 45135424 ~ 45136858 (+) True AMCG00009731
AMCG00009729 mRNA downstream 107760 45139540 ~ 45169283 (+) True AMCG00009729
TU73251 other upstream 353202 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 405841 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 434638 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 617205 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 1069407 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 24285 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 476414 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 528197 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 722806 45754586 ~ 45755115 (+) True G59084

Expression Profile