RNA id: AMCG00009722



Basic Information


Item Value
RNA id AMCG00009722
length 927
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00009722
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44975660 ~ 44984837 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCATGCCTGCAGCACCCCCCCGAATCCAGCTGCAGAGCGCCGTGCCGAAGAGCACGAACGGCAAGGGGGGCCCAATTTCGCGATGCTGCTCATGAAAGCCGACCTGGCCGTATACACGCGTGTGCCACGTCCTGGATCGACGCATCTCTCCCGGGATGATGCGAGTCCTGCTTTCGTGCGGGGCTGCTCCGGCCGACTGCCCCCCGCCCGCCCCCCGCAAGCCCTGACAATATGGTATGCCCCTGGTTTCTTGAATGGAATTCGGCCCGTACCAAGATGGCACAGCCAGGAGGAAAAGAAGGGGGGATGGAAAACGCAACCCGGGGAGAAAGAGCACTTAAGAGAGCAGTGGACGGGTCTGCGCAGAATGGCATGCTTCGGCCAGTGCAGgaaaaaaaaagaagggaaaagcAGCGCACAGCCGTGGCATGGCGGGGGTCGGGCAGCTCTGCGTGCCGTCTGCCGGGCTGACACACCATGGCTGAAGATTACTGGGAGCAGACGGCGGCCCCGGGACACTACTGACACGGCACAGCGAGGGCACACGGCGTCCCAGGCGGGGGTAAGCGCTCCGGTATGCGGCGTCCGAGGCTGCGTTTCGGCACCTTCCCGGCGGTACCGTCGTGTGTTTTCCACGGACACGCACGGCTGCAGTGTGTGCCGCAACAGCGCCGGAGATGCCTGCCTGTGCCGTACAGCAGGTGTACGACTCACGGCCCACAGCAGCATCTTGGCACCGTGCGTGCATGAGTGGGACTGTGCCTCGGACTGTCGGGGAGCCGTGGGCAGTGCCGTGGCAGAGGTTAAAGTTAAGATGATACATCGAGAGACTGTCTGCTCAGAGTCAGTGATCTGTGTGTCAGAAAACCGGCAAAATTCCACAGACAGTGCCGGCCTCTCCGCTGCCACCCGGCGCCGCACATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73340 lncRNA upstream 51960 44922084 ~ 44923700 (+) True G58668
TU73326 lncRNA upstream 54023 44918043 ~ 44921637 (+) True G58660
TU73337 lncRNA upstream 82582 44892845 ~ 44893078 (+) True G58666
TU73281 lncRNA upstream 215602 44759277 ~ 44760058 (+) False AMCG00009706
TU73169 lncRNA upstream 492413 44413272 ~ 44483247 (+) True G58527
TU73472 lncRNA downstream 158338 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 209686 45194523 ~ 45198264 (+) True G58792
TU73541 lncRNA downstream 282102 45266939 ~ 45275033 (+) True G58825
TU73548 lncRNA downstream 291651 45276488 ~ 45277596 (+) True G58830
TU73535 lncRNA downstream 344947 45329784 ~ 45332856 (+) True G58822
AMCG00009719 mRNA upstream 6581 44966879 ~ 44969079 (+) True AMCG00009719
AMCG00009716 mRNA upstream 13376 44950673 ~ 44962284 (+) True AMCG00009716
AMCG00009715 mRNA upstream 41846 44927867 ~ 44933814 (+) True AMCG00009715
AMCG00009714 mRNA upstream 58817 44901426 ~ 44916843 (+) True AMCG00009714
AMCG00009712 mRNA upstream 93935 44856527 ~ 44881725 (+) True AMCG00009712
AMCG00009720 mRNA downstream 4436 44989273 ~ 44998008 (+) True AMCG00009720
AMCG00009726 mRNA downstream 16301 45001138 ~ 45003572 (+) True AMCG00009726
AMCG00009721 mRNA downstream 20332 45005169 ~ 45031780 (+) True AMCG00009721
AMCG00009730 mRNA downstream 104366 45089203 ~ 45093238 (+) True AMCG00009730
AMCG00009728 mRNA downstream 120699 45105536 ~ 45111832 (+) True AMCG00009728
TU73251 other upstream 323693 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 376332 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 405129 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 587696 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 1039898 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 71228 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 523357 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 575140 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 769749 45754586 ~ 45755115 (+) True G59084

Expression Profile