RNA id: AMCG00009727


Basic Information

Item Value
RNA id AMCG00009727
length 1453
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00009727
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45115663 ~ 45119186 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACAATGCGGAGCCTGGCCGGGGAACTTCCCTTATCAGCTTCCTACGTCACGCGTCTCCCCTTCCGTGCGGGCCAAGATGGAGGAATACGCTCGGGAGCCCTGGCTGAAGGGCAGTGCGAATGCAGTGAGAATTCGAGCTCCACAGATCGGAGGCAGTTTCGCGGTGTGGGGGGGCCTGTTCTCTACCATAGACTGCGGCCTGGTGAAGTTGCGTGGCAAAGAGGACCCCTGGAACTCCATCACCAcgaGTCCATTTGCAGAGGACCCCAGCCAGCTGCCCCCAAAGGAACAGAACCGCGGGTTTGGACAGTACCAGTAGCACCGGACTCGGACACCACCTGCTCTCACTGTGACCCCCTTAGACTCACCcccccgagagagagagagacacacacacacacagacagacagacattccTGCTGGTCTGAGACCCGCTGTACGACCCCGGCACACATGACACCAGTGCGGTCCAGAGACAGCATCCAGCACCGTGTGTTTGGACTCGGCCCAGTCGGAGTAGCACCCCATcgaccccccccacacacacacatctgtggaCCGGCGCTGTAATGCACCAGCGCTCCTGGGCCGAGCGGACCCCAGACCCAGGACTGTGCAGAGGAAGATGTAATTTCGTATCTGCAGGAATTTCTACGTAGCAGCagtttacccccccccccaactcctcCTTCCTAAGTGTGACACTCCATCAAACACAGCTGGGGGCATTGGGGGGGCGGTGTCTTTGGTACCGAGTCCCGGCCGAACCTCTCGGACTTATTtcaccacccctccccctctctctccctctctctgctccgTCAGTGTGGGGTTGGTCTGGGTCGGGGGTCCACAGCCAGTCAATCAAGCGAATCGGCTGCAGGGTCAATTAatgtacaagaaaaataaaatacactaaaacGTAAATAAACCTGCACTGATGCACACATGTAAATGGGGATCGACTGCTGTGGTCGTAACGAAAGACACGACAACACGGGACTGCTGCCCCCCCACGCAGGGATGTCCCAGCACCAGCGCGCTGTCCGCACTTCAGCTAAGGGGCCGGGGGGGGCAGACTGTGGAGTGGAGACCCCCACTGTCCCACTAGGATGCTGTGGAGACTCTGACTGTCCCGTTGGTACACTGGAGACCCCCACTGTCCCATTAGCACTTTAGTCCCAGACTGAGAGCAGGGGTCCACCTGGACTCTGTCCCCCCCTAGGTCCAATCACACTGGTCTCTACACCGCCCACTGCGGAGACTGTGTTCTGATTGGCTGACATATGTGTATGTGGGCGGGTTTGTTGGCTTTTTGTTGTCCACCTAAAAAAGAGCCACGATACCAGGGGAATTTGTAGTAGTTTTTCAACAgagtttatttataattgtggataaaaaaaatgtttttaaagaattaaagtattttatgcTGCAAAGTGCATCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73340 lncRNA upstream 191963 44922084 ~ 44923700 (+) True G58668
TU73326 lncRNA upstream 194026 44918043 ~ 44921637 (+) True G58660
TU73337 lncRNA upstream 222585 44892845 ~ 44893078 (+) True G58666
TU73281 lncRNA upstream 355605 44759277 ~ 44760058 (+) False AMCG00009706
TU73169 lncRNA upstream 632416 44413272 ~ 44483247 (+) True G58527
TU73472 lncRNA downstream 23989 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 75337 45194523 ~ 45198264 (+) True G58792
TU73541 lncRNA downstream 147753 45266939 ~ 45275033 (+) True G58825
TU73548 lncRNA downstream 157302 45276488 ~ 45277596 (+) True G58830
TU73535 lncRNA downstream 210598 45329784 ~ 45332856 (+) True G58822
AMCG00009728 mRNA upstream 3831 45105536 ~ 45111832 (+) True AMCG00009728
AMCG00009730 mRNA upstream 22425 45089203 ~ 45093238 (+) True AMCG00009730
AMCG00009721 mRNA upstream 83883 45005169 ~ 45031780 (+) True AMCG00009721
AMCG00009726 mRNA upstream 112091 45001138 ~ 45003572 (+) True AMCG00009726
AMCG00009720 mRNA upstream 117655 44989273 ~ 44998008 (+) True AMCG00009720
AMCG00009731 mRNA downstream 16238 45135424 ~ 45136858 (+) True AMCG00009731
AMCG00009729 mRNA downstream 20354 45139540 ~ 45169283 (+) True AMCG00009729
AMCG00009738 mRNA downstream 55980 45175166 ~ 45184732 (+) True AMCG00009738
AMCG00009737 mRNA downstream 68034 45187220 ~ 45188112 (+) True AMCG00009737
AMCG00009735 mRNA downstream 93381 45212567 ~ 45220687 (+) True AMCG00009735
TU73437 other upstream 57789 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 463696 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 516335 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 545132 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 727699 44386497 ~ 44387964 (+) False G58522
TU73602 other downstream 389008 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 440791 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 635400 45754586 ~ 45755115 (+) True G59084

Expression Profile