RNA id: AMCG00009735


Basic Information

Item Value
RNA id AMCG00009735
length 2508
RNA type mRNA
GC content 0.69
exon number 10
gene id AMCG00009735
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45212567 ~ 45220687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGGAAAGCCTCTTGGCCCATCTgttgtgagagagagacgcatCCCAGTACAAGTGTGTCGTTCAGCGCAGGGTCCTGCGGGCGACTGTGCTCCTCTTTGGGGGGCTGCGGCGGGAAGATCTGCCTGCACTGTAAGTGCGCGCGTGAGGAGCATGCAGTGCGCGCCGTGCCGGGGGACCTGGAGAAGATGATGGTGAAGCTGGTGTCCGACTTCCAGCGCCACTCCATCTCCGACGACGACTCTGGCTGCGCCTCCGAGGAGTACGCCTGGGTCCCCCCCGGGCTCAAACCCGAGCAGGCTGACCCCTGTGTGATGTGTCTGCAGGTGTACCAGTACTTCAGCTGCCTCCCCGAGGACAGGGTGCCCTATGTGAACAGCCCTGGAGAGAGGCACCGCATCAAGCAGCTGCTGCACCAGCTCCCAGCGCACGACAGCGAGccGCAGTACTGCAACTCCCTGGACGAGGACGAGAGGAGGGAGCTGAGGATGTTCTCCCagcagaggaagagggagaacCTGGGCAGGGGGACGGTCAGACTGTTCCCCGTTACCATGACCGGAGCCATCTGTGAACAGtGTGGCAAGCAGATCCGGGGGGGGGACATCGCGGTGTTTGCCACACGGGCGGGGCATGGGGCCTGCTGGCACCCGCAGTGCTTCCAGTGCGCCACCTGCAGCGAGCTGCTCGTCGACCTCATATACTTCTACCAGGACGGCAAGATCTACTGCGGCCGGCACCACGCTGAGAGCATCAAGCCCCGGTGCCAGGCCTGCGACGAGATCATCCTGGCGGACGAGTGCACGGAGGCGGAGGGCCGGCACTGGCACATGAAGCACTTCTGCTGCTTCGAGTGCGAGGCGGCACTGGGGGGGCAGCGCTACATCATGAGGGAGAGCCGGCCCTACTGCTGCGGCTGCTACGAGGCCCTGTATGCCGAGTACTGCGACACCTGCGGGGAGCACATAGgtATAGACCACGGTCAGATGACCTACGAGGGGCAGCACTGGCACGCCACCGAGGCCTGTTTCTGCTGCGCCCGCTGCCGGCAGCCTCTCCTGGGCCGCCCCTTCCTGCCCAAGCAGGGCCTGATCTTCTGCTCCCGCGCCTGCAGCCTGGGGGACGACCCCGACGCCTCCGACTCCTGTGACTCCGCATTCCAGAGCGGACACTCCCTGGGCAGCCAGCGCCGCGCCAAGACGCACTCGCAGACCAGCACCCCCAGCGGCACGAACAGCGCCCCCGCCAGGAGGGAGGCTGCCAATGCAGCGCCGTCCCCGCCCCCCGTCCCCAACGGCCTCCCGCTGGCCAACGGGCAGAGACCCTCCCCCCCGCCCTACCCGCAGGACCGGCTGAGCAACGGCTGGGGCCTGGCCGGACCCCCCGACCAATCGCGCGGCGGCCCGGGCCGGGGACCCCCCGCTCCCAGGCCCGACCGGCCAATCAGCTGTCTGGAGTTCTCGGCGGATCAGAACCCCGAGTTTGggccccccccacctcccaggTACACCTCCCGAGGGACGTCGACCACGAGGGACCCCGGGACCAAGGGGGACCCCGGCTCTGCAGtgggtGAGCGTGTGAACTTCAGCCACTCTCAGCGCTACTCGATGCCCAACCTGGGGAGTCATCTCTGTCCTGGGGAGGGCCCGCCTCCTCCCCAGGGGGACCCCTCTGATTCACTGCCCAGATCCCAGCGCGGCGAATTGCAGCCCCCATCCCGGTTTGAGGCCCCGCCCCCGCCAGCCTCGGCCACCCAACTGTCTCGCACCAACACCGCCCGCGTCAGCTTCCGGGAGCCGATCAGCAGCAGCTTCCTGGTGGAGgacgaggaggatgaggacgaggacggggaggaggaggaggagcggcGGCAgcgagaggaggaagaggaggaggaagggggtgaggggagggaggtggAGGGAGAGCAAGGTGAGGAGGGCGGAGGAGACGCCGGGTGCCGGAGCAGAAACCGATTCCAGAGACACGGCTGCCGGATCCCGCCCCAGATGGACCTGCTggTGGACGGGCCGTACCAGCAGCGCAGTTTCCGACGGGGGTCCCGCAGTCGCCCCGGCTCCGAGTCCTGTCTGCACCTGGGCACGGAGCGCCGCTTCCGGCAGTCCTGCGCCGAGCGGCCCCGGCTGGACGCGCTGGACTGGCGGGGGACCGGCAGGGCCTTCTCCCCGGGGGGCCCTGTCTCCACCCCGCCGCCCCTCACCCTGCGACCCGGCCGGCCGCACCACGAGGACTCCTGCTCCACCTGCTCCTCCGACTCCGACTCCGAGGAGGACGGCTTCTTCCTGGGCCAGCCCATCCCCCTGCCGCCCCAGCTGCGCGACCCCCACGCGCCGGCCCCCCGCCACGCCCCGGACGCCGAGCGAGGGAGGGAGCGGGACAAGGAGGGCGAGGGCGGCCTGCGCGCCAGTCTGCGccggagggggagggggcggacAAACAGCGTGAGCAGAGACAAGGACAAGAACTGCGTGCTGTCGTAG

Function

GO: NA

KEGG:

id description
K04511 PRICKLE; prickle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73492 lncRNA upstream 14303 45194523 ~ 45198264 (+) True G58792
TU73472 lncRNA upstream 69095 45143175 ~ 45143472 (+) True G58776
TU73340 lncRNA upstream 288867 44922084 ~ 44923700 (+) True G58668
TU73326 lncRNA upstream 290930 44918043 ~ 44921637 (+) True G58660
TU73337 lncRNA upstream 319489 44892845 ~ 44893078 (+) True G58666
TU73541 lncRNA downstream 46252 45266939 ~ 45275033 (+) True G58825
TU73548 lncRNA downstream 55801 45276488 ~ 45277596 (+) True G58830
TU73535 lncRNA downstream 109097 45329784 ~ 45332856 (+) True G58822
TU73534 lncRNA downstream 118918 45339605 ~ 45398453 (+) True G58821
TU73604 lncRNA downstream 291949 45512636 ~ 45513047 (+) True G58876
AMCG00009737 mRNA upstream 24455 45187220 ~ 45188112 (+) True AMCG00009737
AMCG00009738 mRNA upstream 27835 45175166 ~ 45184732 (+) True AMCG00009738
AMCG00009729 mRNA upstream 43284 45139540 ~ 45169283 (+) True AMCG00009729
AMCG00009731 mRNA upstream 75709 45135424 ~ 45136858 (+) True AMCG00009731
AMCG00009727 mRNA upstream 93381 45115663 ~ 45119186 (+) True AMCG00009727
AMCG00009734 mRNA downstream 15480 45236167 ~ 45241904 (+) True AMCG00009734
AMCG00009736 mRNA downstream 31248 45251935 ~ 45254181 (+) True AMCG00009736
AMCG00009749 mRNA downstream 88870 45309557 ~ 45312392 (+) True AMCG00009749
AMCG00009743 mRNA downstream 155751 45376438 ~ 45389713 (+) True AMCG00009743
AMCG00009753 mRNA downstream 170065 45390752 ~ 45396023 (+) True AMCG00009753
TU73437 other upstream 154693 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 560600 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 613239 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 642036 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 824603 44386497 ~ 44387964 (+) False G58522
TU73602 other downstream 287507 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 339290 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 533899 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006662 True 3485 mRNA 0.49 8 NC_007122.7 19433936 ~ 19469070 (+)