RNA id: AMCG00009737


Basic Information

Item Value
RNA id AMCG00009737
length 384
RNA type mRNA
GC content 0.69
exon number 2
gene id AMCG00009737
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45187220 ~ 45188112 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCTGGTGAGCTCGGCCGCCTGGGCCAAGGGGCTGTCCGACGTTAAGACGGCCACAGACCCCGAGCGCGTTCTCACACTGGTGACAGCCTGCGAGCGTGAAGAGAACCGCTGCAAGGAAGAGACCGGCTGGACCGCCCCGTTCATGCGCTACCCACCCCCCGCCCAGGAGAAGCAGCCCGCCCCTGAGTCCTTTGGTCAGCCCGGGCCCGGCTACGGCCAGGAGGGCGGCTACAGCCAGGGCGGGGATCCCTACGCCGCATCCCAGGGCGGCTACCAGCCCGACTACGGCCAGCAGGGCGGCTACAACCAGGGCGGGGACTACACCCAGGGTGGCTACAGCCAGCAGGGGGCGCCCACCTCTTTCTCCAACCAGATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73472 lncRNA upstream 43748 45143175 ~ 45143472 (+) True G58776
TU73340 lncRNA upstream 263520 44922084 ~ 44923700 (+) True G58668
TU73326 lncRNA upstream 265583 44918043 ~ 44921637 (+) True G58660
TU73337 lncRNA upstream 294142 44892845 ~ 44893078 (+) True G58666
TU73281 lncRNA upstream 427162 44759277 ~ 44760058 (+) False AMCG00009706
TU73492 lncRNA downstream 6411 45194523 ~ 45198264 (+) True G58792
TU73541 lncRNA downstream 78827 45266939 ~ 45275033 (+) True G58825
TU73548 lncRNA downstream 88376 45276488 ~ 45277596 (+) True G58830
TU73535 lncRNA downstream 141672 45329784 ~ 45332856 (+) True G58822
TU73534 lncRNA downstream 151493 45339605 ~ 45398453 (+) True G58821
AMCG00009738 mRNA upstream 2488 45175166 ~ 45184732 (+) True AMCG00009738
AMCG00009729 mRNA upstream 17937 45139540 ~ 45169283 (+) True AMCG00009729
AMCG00009731 mRNA upstream 50362 45135424 ~ 45136858 (+) True AMCG00009731
AMCG00009727 mRNA upstream 68034 45115663 ~ 45119186 (+) True AMCG00009727
AMCG00009728 mRNA upstream 75388 45105536 ~ 45111832 (+) True AMCG00009728
AMCG00009735 mRNA downstream 24455 45212567 ~ 45220687 (+) True AMCG00009735
AMCG00009734 mRNA downstream 48055 45236167 ~ 45241904 (+) True AMCG00009734
AMCG00009736 mRNA downstream 63823 45251935 ~ 45254181 (+) True AMCG00009736
AMCG00009749 mRNA downstream 121445 45309557 ~ 45312392 (+) True AMCG00009749
AMCG00009743 mRNA downstream 188326 45376438 ~ 45389713 (+) True AMCG00009743
TU73437 other upstream 129346 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 535253 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 587892 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 616689 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 799256 44386497 ~ 44387964 (+) False G58522
TU73602 other downstream 320082 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 371865 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 566474 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU93299 True 3656 lncRNA 0.39 2 NC_056706.1 11437746 ~ 11441996 (-)