RNA id: TU73621


Basic Information

Item Value
RNA id TU73621
length 1534
lncRNA type read_through
GC content 0.53
exon number 2
gene id AMCG00009742
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45251637 ~ 45277597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNcagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatctatgggcgctgtgtgtcagtgtgtatatatacctgtgggctctgtgtgagtgtgtcagtgtgtatatatacctgTGGgcgctgtgtgttttgtgctgtgGTATTGAGATCCTCTTATTTAAAGCTTGTGAAACCTGGTTGTTCCTCTGCAGaaacctctctctcacacaaacacacgcacacactgtgGGCTGAGACCCGGCTGGACTGGCCTGCGTCTCTgcggcagagagagagaataaccGAGATAGAAATGAATCACAGAGAGacgtggagagagagagagatagaggccGGGGACTGAACAGaatcagagacagagagagggaagatagaagagaagagagaacgCAATCAGgaagagggagatagagaggcTGAAGAGAGAGAACGCAAGGGCGAGGGCAGGCGGGTTGGTGGGCGTGAGGGAGCCGCTGTTTCAGTCCCCTGTGTATTGGGGTCTCGCTATTGCTCAGCACTGTCTCTGTGCGACAGAGATAAGAGCCCTGGTTCACAGTAGCGCTTTTCTAGGGAAGCACCGTCCCAGAGCCGCACACCCAGCGCTGCCCGTCTCTCACCCCGCCCCCGGTCCTTCCCCGtccccctgtccctctctcagcctcttcctgtccctgtccctctctcggCCTTGGTCTTgtcctctccctgtccctctcttgGCCTCTTCCTCTCGCtgtctctgcttctctctctccttataacgtctttttttccccacagactGCTGTGGTGCATCCGTGCATTGCCTCTTCCCTGGTTGTAGTCGCTCATTCCAGTGCCTCCCGGACGTGTTCTGATTCGGTGGCTAAGATGataggtgtgtttgtgtagaaataataaaatattaaaaactcactggttgtgtttgttgtgtgcgTCTCTGAGGGGGTGCATGCgttgagtgtgtcagtgtgttgtctgtgtgtgtgttagtgttttgtCTTTAACCTCTGTCCTCTTGCTGACAGAGCctaccccctctccctcctctctctctctgtccctctctttctctctcactgtgccGTCTGATAACCTCTTATCAACACAGCGCAGCCACCAGAGTGTAAGCCACCGGCCACATCCCGAGCGCATGCCCTGCCGTctgcctcctccctccctcccctctctctctctctctctttctctctctctcaattcaattcaattcaattcaattcaattcaattcaaggtgcTTTCAATTCTCTGTCACACACCCATGTTGTTCCTGACACTCCTTCAGCATTCTCTCTCGGCCTCCCTTCTTTGCCGCCATGTGTCcacactctctcgctctcgctctgcCTCTCTCAACCCACAGGGCCGGGACAGACAGAGCCAGTTCTCCGCCTCACTGCCGCACTCCTCACAGGGCCGGGACACGTCCACCCCGCCGGCAGGCAAGGGGTTAACAGCCTGCAGGTGAGGGCACCACGTCAACGGCTCCACCAGGAACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73521 lncRNA downstream 2364 45184361 ~ 45250020 (-) True G58808
TU73514 lncRNA downstream 10451 45219629 ~ 45241933 (-) True G58807
TU73509 lncRNA downstream 21927 45168941 ~ 45230457 (-) False AMCG00009739
TU73456 lncRNA downstream 133160 45090217 ~ 45119224 (-) True G58761
TU73413 lncRNA downstream 252150 44998032 ~ 45000234 (-) True G58724
TU73634 lncRNA upstream 54618 45332215 ~ 45336884 (-) True G58901
TU73635 lncRNA upstream 59558 45337155 ~ 45339418 (-) True G58902
TU73636 lncRNA upstream 61903 45339500 ~ 45345259 (-) True G58903
TU73637 lncRNA upstream 95161 45372758 ~ 45373072 (-) True G58904
TU73672 lncRNA upstream 184950 45462547 ~ 45465377 (-) False AMCG00009755
AMCG00009740 mRNA downstream 5440 45245712 ~ 45246944 (-) True AMCG00009740
AMCG00009739 mRNA downstream 21979 45224089 ~ 45230405 (-) True AMCG00009739
AMCG00009733 mRNA downstream 128380 45120311 ~ 45124004 (-) True AMCG00009733
AMCG00009732 mRNA downstream 137499 45113433 ~ 45114885 (-) True AMCG00009732
AMCG00009724 mRNA downstream 164897 45057674 ~ 45087487 (-) True AMCG00009724
AMCG00009747 mRNA upstream 3605 45281202 ~ 45283020 (-) True AMCG00009747
AMCG00009746 mRNA upstream 9421 45287018 ~ 45305373 (-) True AMCG00009746
AMCG00009744 mRNA upstream 37678 45315275 ~ 45318328 (-) True AMCG00009744
AMCG00009748 mRNA upstream 43160 45320757 ~ 45326055 (-) False AMCG00009748
AMCG00009745 mRNA upstream 68384 45345981 ~ 45351180 (-) True AMCG00009745
TU73318 other downstream 467250 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 685550 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 709575 44541894 ~ 44542809 (-) True G58584
TU73231 other downstream 740135 44508253 ~ 44512249 (-) False AMCG00009697
TU73015 other downstream 1256730 43989511 ~ 43995654 (-) True AMCG00009672
TU73631 other upstream 43246 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other upstream 43246 45320843 ~ 45323322 (-) False AMCG00009748

Expression Profile