RNA id: AMCG00009748


Basic Information

Item Value
RNA id AMCG00009748
length 1089
RNA type mRNA
GC content 0.68
exon number 9
gene id AMCG00009748
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45320757 ~ 45326055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGCTTCGGGGCGGAGGGACGGTAATTGACGCCTCTGCTGCGGTCCGGAGCCCGACTTCCCGGGTGCTGCAGGACCAGTGTGAGCTGCGCGTGGCGCAGCGCAGAGAGAACCGCACCGACTACGTGATGCATTACTGGGGTGTGCGCAACGGCACAGTGGGGGACCTGCTGAGCCTGCTGGAGGAACTGGGCCTGCTGAGGGCCCGAGACATCATCCTGAGCTGTGAGTCGTCCCCCAACCTCCTCTGTCCCTCTTCCTCCCCGACCAGAGTCCTGATGCAGGGCCGTGTGCCGAAACCCGGGTTCTTCGTCCAGGGTGCTGCCCAGGCCaggccccccgccccccagccTCAAAACAGAACACGCAGACCCGAGAGAGAGGCCCCCCCCTCAGGTGACCCGGTCTCCGGGCTGTCCTGCAGCGCCCACTGCTGGCCTCTGGAGGAGGTGCTGCGCGGGACAGACAACTTCTCTGTGCGGCGCTGTGCGGGGGTGTACTGCCTGGTGTATGTGTACATGCCCAGCGGCTCCCTGCAGGACAGGCTGCACAGCAAGGGCGGTGGCACCCTCTCTTGGGCGCAGCGGGTCACTGTCCTGCTGGGCACCGCCAGGGCCGTTCActccaaCATCCTGCTGGGGGACAGGTTGGAGCCGCGCCTGGGGGACTTCGGCCTGGCGCGGTTCTGCCGGGCGGCCCCGGGGGGGGCGGGGCGGACGAGCGCCGTGGCTTGGACAAGCAAGGTGCGCGGGACCCTGGCCTACCTGCCCCCCGAGTATGTCACCGCTGGGGAGCTCAGCATCGCCATCGACACCTACAGCTACGGAGTGAAAGACCTGGTGAAAGAAGCTGatgaggtggaggaggaggagaaaggagGGCAAAAGAGTGAGAGTGGAGGAGGAGTGCAGGCGTCTGCCCCCccccctgctgaggagaaggtCAGACGGGCCGCCGCCCACATCTGGAGGAAACACCTGGACCCCCGCCTGCCCGCCCCCGCACCCCCCGGAGCCCTGGAGCTGTGTGCCCTGGCCTGCCGCTGCCTGGACAAGAGGAAAAAGAAGAGGCCGCCCATGGCACAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73621 lncRNA downstream 43160 45252384 ~ 45277597 (-) False AMCG00009742
TU73521 lncRNA downstream 70737 45184361 ~ 45250020 (-) True G58808
TU73514 lncRNA downstream 78824 45219629 ~ 45241933 (-) True G58807
TU73509 lncRNA downstream 90300 45168941 ~ 45230457 (-) False AMCG00009739
TU73456 lncRNA downstream 201533 45090217 ~ 45119224 (-) True G58761
TU73634 lncRNA upstream 6160 45332215 ~ 45336884 (-) True G58901
TU73635 lncRNA upstream 11100 45337155 ~ 45339418 (-) True G58902
TU73636 lncRNA upstream 13445 45339500 ~ 45345259 (-) True G58903
TU73637 lncRNA upstream 46703 45372758 ~ 45373072 (-) True G58904
TU73672 lncRNA upstream 136492 45462547 ~ 45465377 (-) False AMCG00009755
AMCG00009744 mRNA downstream 2429 45315275 ~ 45318328 (-) True AMCG00009744
AMCG00009746 mRNA downstream 15384 45287018 ~ 45305373 (-) True AMCG00009746
AMCG00009747 mRNA downstream 37737 45281202 ~ 45283020 (-) True AMCG00009747
AMCG00009741 mRNA downstream 51145 45267403 ~ 45269612 (-) True AMCG00009741
AMCG00009742 mRNA downstream 59462 45251637 ~ 45261295 (-) True AMCG00009742
AMCG00009745 mRNA upstream 19926 45345981 ~ 45351180 (-) True AMCG00009745
AMCG00009754 mRNA upstream 71134 45397189 ~ 45402415 (-) True AMCG00009754
AMCG00009756 mRNA upstream 131757 45457812 ~ 45458370 (-) True AMCG00009756
AMCG00009755 mRNA upstream 132688 45458743 ~ 45462712 (-) True AMCG00009755
AMCG00009766 mRNA upstream 311922 45637977 ~ 45642744 (-) False AMCG00009766
TU73318 other downstream 535623 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 753923 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 777948 44541894 ~ 44542809 (-) True G58584
TU73231 other downstream 808508 44508253 ~ 44512249 (-) False AMCG00009697
TU73015 other downstream 1325103 43989511 ~ 43995654 (-) True AMCG00009672

Expression Profile