RNA id: AMCG00009754


Basic Information

Item Value
RNA id AMCG00009754
length 2332
RNA type mRNA
GC content 0.62
exon number 14
gene id AMCG00009754
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45397189 ~ 45402415 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAATGCATAAGTAATCGTTTTCAACAATCCACCCACACCGACATCACACTTCACGAGTGGAGCAGCAGACCCACGCCAACGGGCAATGTTTACGACAGCCCGCAGAGCAGAGCGCTTTGCCTGTGCCGACTGCTTTACGGCAGAACGTGGCCGCACAGCCTGGGAAAACATGTCGAAAGCCAAGCAGAAAAGAGCGAAGCGCCTGGGCTTGATCGGACGGAAAAAGggGAAGGATGGGGAGCAGTCGAAGGCTCCAGGAGGCAGGAAGGACCAGGGCGTCCCCAACGTGCAGCATTTCAAGCAGCGTGCCCAGAGACAGGCGGAGCTGAGGAAgaagaggctggaggagctgcaggagaaGCAGAAGGCGTCCCGGGAGAAGGAGCTGATGAAGAGGCGCAGTCTGGACGGCTTCCAGAGGGACGCGCAGCGGCGGCAACAGGAGTTCGAGCAGAAGGAATCTCAGATGCGGGGTCTGGAGAAACTCGTGAACTTCGAGACCGAGAACTCCAGGAAGGCTTACTACAGGGAATTTAAAAAGGTGATCGAGGCAGCGGACGTAGTGCTGGAGGTGCTGGACGCCAGGGACCCACTGGGCTGCCGCTGCCCCCAGGTGGAGCAGGCCGTCCTGCAGAGTGGCGCCACCAAGAGGATTGTTCTGGTGCTCAACAAGATCGACCTGGTGTCCAAGGAGATCGTGGAGAAGTGGATCAGGTACCTGAGGAATGAGTTCCCCACGGTGGCCTTCAAGGCGTCCACTCAGCAGCAGAGCAGGAACCTGAAGCGCTGCAGGGTGCCAGTGGCCCAGGCCGGTCCGGAGCTCCTGGCCAGCGCCGCCTGCGTTGGCGCCGAGTGTCTGATGCAGCTGCTGGGCAACTACTGCCGGAGCCTCGACCTGAAGACCGCCATCACCGTGGGGGTGGTGGGTTTTCCCAATGTGGGGAAGAGCAGTCTGATCAACAGCCTGAAGAGAGCGAGAGCCTGCAGTGTAGGAGCAACGCCAGGGGTCACCAAGTGTCTGCAGGAGGTGCACTTGGACAAGCACATCAAGCTGCTGGACTGCCCGGGCATCGTCATGGCCACGTCCAGCTCGGACGCCGCAATGATCCTGCGGAACTGCGTGAAGATCGAGCAGCTGCTGGACCCTGTGGCCCCCGTGGAAGCCATCCTGCGCCGCTGCAACAAGCTGCAGATCATGCAGCACTACGGGGTCCCTGACTTCCACAGCCCCCTGGAGTTCCTGGCTCTGTTGGCGCGCCGGCAGGGGAAGCTTCGCAAGGGTGGGCTGCCCGACCACGACAAGGCTGCCAGGAGCGTCCTGCTGGACTGGACAGGCGGGAGGATCAGTTACTTCACGCACCCCCCCGAGACGCACACCCTGCCCACGCACGTCAGCGCACAGATCGTGGAGGAGATGGGCCGAGCTTTCAACtgggaggagctggagaagggCAACCAGGATGCGCTGGCAGCTGTGCAGGTCAGTGACCCGGGTGCAGGGACAGGCTTCTGCATGCTCACCTCGGGCATGACCCCGGGAGGTCAGGTCCCGCCGGAGCAGGACATGGACAGCTTGGCGCAGGAGGGcgctgaggaggaagaggagaaggaagagCGGGAGGAGACCATGGAGGACGACCGAGACACGGAGTTCGGGCCGATGACGGTGCAGTTCAAGGAGGCCGGCGTGAAGGTGGGGGGGGCCGCGGTGCAGCCGGGCGCGGGAGGGAGGGCCCGGCCGCTCGCCCTGTCCCACATCCTGGAGGTGGAGCCCCTGCAGCAGGGCCAGGCGCTGCGGGCCGCCGGCAAGAGGAGGCGGAAGCAGCAGAAGAGGGCCGGTGCGCAGGATCGCCtatcctcccctctctcctcctcctgtccGTCTTCATGTTTCCTTTCCCTCCTCCTTCCATCTTGTTCTTCCCCTTCCTCTGCCAACTGGACCTCTcctactcctcttcctcctgtaCTCTTCTCCTTCTCTGGGTGTGTCAGTGATTGGTTTGGTTGCGATATCTTTTTGTAATTAACCTCAATTACCGCCAATCAGTCAATCTTCTAATGAGGTACAGACCCCCCCCCTCCATGGCCACTGGCTCGAGCTCCTCCCGGGGGCTGCAGACCCGCGCATTCAACCCCTCAGGCAGGAGCGTGGGGGGGGCTCACGCGTCTCATTAGCATCATAGTAATATGAACAGGTACGGAGCGTGACTGAGGTTGGAGCTGTTGTAATTTTTTGCCCCCCCCATCTTTCCCTCTCCAGACAAGATCGCCACCAAGCTGTCGGACTCCCTGACGTCAGCGATGAACTTCGCCTTCTCGGACAGCT

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73637 lncRNA downstream 24117 45372758 ~ 45373072 (-) True G58904
TU73636 lncRNA downstream 51930 45339500 ~ 45345259 (-) True G58903
TU73635 lncRNA downstream 57771 45337155 ~ 45339418 (-) True G58902
TU73634 lncRNA downstream 60305 45332215 ~ 45336884 (-) True G58901
TU73621 lncRNA downstream 119592 45252384 ~ 45277597 (-) False AMCG00009742
TU73672 lncRNA upstream 60132 45462547 ~ 45465377 (-) False AMCG00009755
TU73679 lncRNA upstream 71120 45473535 ~ 45554714 (-) True G58940
TU73724 lncRNA upstream 180091 45582506 ~ 45583007 (-) True G58979
TU73723 lncRNA upstream 182388 45584803 ~ 45585371 (-) True G58978
TU73729 lncRNA upstream 189332 45591747 ~ 45629373 (-) True G58982
AMCG00009745 mRNA downstream 46009 45345981 ~ 45351180 (-) True AMCG00009745
AMCG00009748 mRNA downstream 71134 45320757 ~ 45326055 (-) False AMCG00009748
AMCG00009744 mRNA downstream 78861 45315275 ~ 45318328 (-) True AMCG00009744
AMCG00009746 mRNA downstream 91816 45287018 ~ 45305373 (-) True AMCG00009746
AMCG00009747 mRNA downstream 114169 45281202 ~ 45283020 (-) True AMCG00009747
AMCG00009756 mRNA upstream 55397 45457812 ~ 45458370 (-) True AMCG00009756
AMCG00009755 mRNA upstream 56328 45458743 ~ 45462712 (-) True AMCG00009755
AMCG00009766 mRNA upstream 235562 45637977 ~ 45642744 (-) False AMCG00009766
AMCG00009767 mRNA upstream 275826 45678241 ~ 45678855 (-) True AMCG00009767
AMCG00009771 mRNA upstream 281145 45683560 ~ 45695262 (-) True AMCG00009771
TU73631 other downstream 73239 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other downstream 73867 45320843 ~ 45323322 (-) False AMCG00009748
TU73318 other downstream 612055 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 830355 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 854380 44541894 ~ 44542809 (-) True G58584

Expression Profile