RNA id: AMCG00009757


Basic Information

Item Value
RNA id AMCG00009757
length 3557
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00009757
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45521353 ~ 45531436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTGTCTGACACTCTTTCTTTCCACagaaaagaacaatgaaagGACAGAAGAAGGTGAAGCCACTGAAAATCTCAAAATTGAAGCGATCGATGTCCGAGGACTACGTCAATGTGGTGCACAAGATGCGGAAAGTGCAGAAAGTAGAGAAGCACCAGCCCCAGTACGAGGAACCCCTGAGCCCCAAGAagTACTCCATACCCCAGTACAGCGACTTCGAGGACTACTCGTACTACTACGATGACAACGACAACGATgAGGGCCCTAAGAAGCGCAGCCGGCGCTCTTGTGGGAAGTGTGAGGCCTGCCTGCGCACCACCGACTGCCGCACCTGTGACTTCTGCATGGACAAGCCCAAGTTCGGCGGCCGCAACAAGAAGAGGCAGAAGTGCCGCCTGCGCCAGTGCCAGGTGGAGGCCATGAGGCACCTGCTGCCTTTCCAGCGTGGGCAGACGGCCTTCATGCCCGAGGTGGGCTGGCTGGGCCCGGGCCGGCAACGCACCGAGAAGCATCGACCTGATGCCCAATCCCGCCGCGGAAAGCCCGGCCGCCCCCGCAAGAACTGGGCCTCCTGGGAGGACTTTGAGTTCACCAACGACGAGGAGGACGATGATGAGGAAGGGTACGTGGGCACGCTGAGGCCCCGGGCACCAGGGCTGGGCCTCGGCGAGGAGGACGAGGACCTGGAGGATGAAGAGGATGACGACAGCTCGGCCGCCCCCTCGCAGatggggtcagaggtcaacTACTTCTCCTCCTATCCCGGCTACACCAAGACGGACTCGGACGAGCTGTACGTCAGCAACTACCCCCTCACCATCCAGGGCTGCTTCAGGGCTGACATCGGGAACCTGCAGCTGATGAAGGTGGGAGAGTTTCCAACCCTAAGTCCTGAGCCCAGccagcccccgcccccccccCAGAGCGCTGATCCAGCCCGAGCTGAGGGGGGGGCGCTGGATGAGGATGTGGAGATTGTGGAGGTGGACACTGGGGAGCCCGACGTGCAGGACGTCACGCCCGTGATCACCGAGATCTTCAGCCTGGCCCACCCCAGCAGCGGTGCCTCCCCCCCAGGCACCGCCGCCTCCTCCCCCTCCGCCTCCTCGTCCGACTTCCCCCCCGACCACgagctgctggagctgctgcgcACACTGCGGGGGGCCGTGCTGCCGGCGCACTGGCTGGGCCTGGCGGTTGGAGGGCCgcggctgcagctgctgcagtgCTCCAAGCTGTCTGCCATGGCCGACACGGCTGTGTTCATCGAGCCCGGCTTCTACTTCCACGTCCGGGTGCAGGAGcagccgctgctgctgtcccaCTCGCTGTTCGACGCCCACCCGGCCCGGCTGGACAGCGCGGCGGCCGTGATCGCACTGCTGCGCGACTTGGAGGGCTATGCCGTGTGCCGGGGCTACTCCCCAGCCGTGCTGCCCGACGCCCACCGCGCCACCCCCCCGGGGCCCGTGCTGTACGTGCGGGCGGCCGCCTGCGACCTGCTGGTGCCCCAGGAAGGGGAGGAGCGCTGCGACAAGTGCTGTGTCACCTCCCTGCTTTTgtgagaggagggggagggaaggaGCAGCTTCCCCGTCTttatcctcctcctcctcctcaggaCAGAGCCATAACAGCCCCTCTCCAAACCAGCTGCCTGGAGGGGGAAGGGGTAGGAGTGTGTGCTTGGGTCAGTGTGATTGTacgcgtgtctgtgtgtgtgtgcgtgtgagtgcgtgtgtctGCAGTTCTCAGTTGTCTCTTTGTTGACGGTGCTTCAATGCTCTCCAGACTTGTTTCTCACGCATGGAGGACAACGCAACGCAAAGACTCGTTAAACACAACAGAAAGCATTCTACCTCTGGGCGCCTGGCTGGGCCTCTGCTCTCCGGCCCGGCCCTCCGCCATTTTTGCAGGGCGGGGGgcacaatgtttttctttcttgaatcCCTCTGTTTATATAAcaatctcccccccccctccacccatCCTGCAATTGACGGTATGGGGTCGTGTCTGCGCACTGAATCGGCTCTGGGCgtctgcagctctgtgtgtgcGGAGAGACTTTtgttttggtggggggggtactgtactgtgtgaaaTAGTTCTCTGGCTCCTCacggtggggagagagagagagtgaaagaggaggaggaggaggaggaggaggacgacgaCGACTGGCAATACAAATTACCCATCAGCCCATTCTCTCACCGACCAGTCCGCCCCGGAAGGAGCCGCTGCGTGCCAAACGGAGCGTGTGCGAGGGGACCGCCCCCCCGTGCTCCCCTCCAGGAGCCACACCTTTGTTATTGTTGGAtttgcttttcatatttttttgagGGAAGTCTGCGTCTCGCTTCTCTGGGCAGAGCAGCTGAGCATGACACCGGCCTCCctgccttttaatttattttttaattttaatttacagatgtatatatgcattttattttgtgacagAGAAGCTGCTCTTCCTGGCTCCCCTCCCCAGTGATTGGCGCTCCGCTGCCTGTGGAAACACTACAGCTCTGACCCGACGGACCCTGCAATCTGAGGGCTGGGCCGGATCAGAATCGCGGTGTCCTTCCCACAGGCGGCGAGGTCCGAATCCACGCCCTGTAATTCACTGCtagaagccactttatactattGATACATTCTGTTTTGATTTGGCCGAGCCCCCAGTCCACCCTCTGCGTCGCGCGTCTGGACAGACTGATTGATGGTGATGTGCAGACCACCCCGCCACCGGACCCCCTGCGAATCCTAGAGCACCGGCCTGTACCTCCCACTGCAGGGCCAACTTCCGTCAGAAGCCACTTTTTTCCTACTTAGAGATCGGAACTCAACACTGTGGGGGGGGTGAGATTCTGTTAGGGATGGGAAAGTGGACGCCATGGacacacaactacacaaacCACGCCACGCAGCCCGCTGCACGGCCTCCCCCCAGCGTCACTCAGGGCCAGAGCGCCCCCCACTCAATGAAACCGTTCTTGAAACCATTTGGGTGGCTTTAGAGGCCCAGTGCATTATGGGTCAAGTCAGTCGGATTGAAATGAATTTGGACTTGGCTTTGTGTCTGTATTCTATTATGAAATACTGATTTTGgtttctgatttctgatttgattttggaaatactgtttcccccccccccaccgtaAATTTACAACCCCCACCCAaaagatactttttttttttaaatgatttattttattttatactttttttcctgCCGTCGGTCCGGGGCATCGTGTTTATTTAAGAACCGTTGAATGTGGTTACAGTGACACACTGGAGCGAGACTCGAAAGTGCtgctgaggaagaggaggaggaggaggacgaggggAGATTCATTCTTTAAGTGCAGTTTGAGTATCATGTTGCCTTGATATCTGTTTTTATGTTGGTTCTTTTGTTTGACTTTCGTACCGTTTCCTTCCCGCCCATACGGTGTGGGTTTTGCGCACCAGTGCCGCCCTCTTCGCAGGGACAGGAAGGCTCTGCCACTGATTTTAATCCAGTTCTGTAGAATAAAGGAACCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73604 lncRNA upstream 8306 45512636 ~ 45513047 (+) True G58876
TU73534 lncRNA upstream 122900 45339605 ~ 45398453 (+) True G58821
TU73535 lncRNA upstream 188497 45329784 ~ 45332856 (+) True G58822
TU73548 lncRNA upstream 243757 45276488 ~ 45277596 (+) True G58830
TU73541 lncRNA upstream 246320 45266939 ~ 45275033 (+) True G58825
TU73708 lncRNA downstream 41834 45573270 ~ 45575964 (+) True AMCG00009760
TU73715 lncRNA downstream 51083 45582519 ~ 45584669 (+) False AMCG00009758
TU73710 lncRNA downstream 53322 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA downstream 53388 45584824 ~ 45585330 (+) False G58971
TU73754 lncRNA downstream 108199 45639635 ~ 45640037 (+) True G59006
AMCG00009761 mRNA upstream 10316 45507767 ~ 45511037 (+) True AMCG00009761
AMCG00009750 mRNA upstream 44356 45466659 ~ 45476997 (+) True AMCG00009750
AMCG00009752 mRNA upstream 67374 45437969 ~ 45453979 (+) True AMCG00009752
AMCG00009751 mRNA upstream 85488 45422527 ~ 45435865 (+) True AMCG00009751
AMCG00009753 mRNA upstream 125330 45390752 ~ 45396023 (+) True AMCG00009753
AMCG00009759 mRNA downstream 28855 45560291 ~ 45572255 (+) False AMCG00009759
AMCG00009760 mRNA downstream 41834 45573270 ~ 45574076 (+) False AMCG00009760
AMCG00009758 mRNA downstream 45103 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009763 mRNA downstream 67171 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009764 mRNA downstream 111802 45643238 ~ 45647541 (+) True AMCG00009764
TU73602 other upstream 12249 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 463479 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 869386 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 922025 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 950822 44567365 ~ 44570531 (+) True AMCG00009694
TU73611 other downstream 28541 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 223150 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU90222 True 2606 lncRNA 0.44 3 NC_053117.1 37102992 ~ 37107459 (-)
tiger barb (Puntius tetrazona) TU90222 True 3264 lncRNA 0.39 3 NC_056706.1 4020883 ~ 4024734 (-)