RNA id: TU73611


Basic Information

Item Value
RNA id TU73611
length 2052
RNA type TUCP
GC content 0.65
exon number 12
gene id AMCG00009759
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45559977 ~ 45572255 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGAAGTGAGGACAGTTGGTCTGGAGTCACAGCGAGGCAGATAAGCttgaaaaagaacagaaacacaacaaaaacaagatatatatatatattatccacGGATATCTGTGTGCGTTAAAAAATGAACCGGACTTAGTATATGGGACGTttacaaaaaatgcatgtatgaaAGTGAAGCAACAGACAAGACAGGGACGGGAAGACGCACAGAGCTGGAGGCGCAGGAAAGGCTGCACAACCAGCCCCCAGAAGTGTGCGCGCCCCCCCGGTGTGCGCGTTGGTGCGGCCCGAGCGGAGCGCAGTAGCCGGGGCGCCGGACAGCTGATCGCGCCGCTGCGGGACCGGGGCTGCTCTCCTCCGGGGACGCCGCCTCTCTGCTGCCGGGGCGCGGAGGCGCACTGTCGCGACTGGGGAACTTCTGCACGTCTGGCTTCGCTGAACGCAATTTTATAACAACAGGAGGGGAAACCAAAGTCTGTctatgtgtgtatttctgtaagTGTGGATGTGCGATGAGTGCGGAGCGAAGACAGCAGCGTCGCGGCCCCGTGCGGACAGCGAGGAAACCCGGCTGCGAGTCTCCCGGCGCCCTTAGAGGAACTTTCTGCGGGACGGAGTAACAGCGACAAAACACGCGTCGAGGAAGAAAACAGGAGTCCAACACACCACAGCCGCCGCCGATCACAGTCCTGCCCTGCTGTGAGGGCTGAGGTCCGGCCCGGAGCCCCGCTGCCCGGTGCGGGTCGTGTCCCTGCGGCACGGAAGAGCAGTCTTGGATCTGGGCAGCTGAGAGTCGGGCAGAGCTGCGCAGGATCGCTGTAGGCGGAAAGGTCAAAGGGTGCATGGCCTCATCAGCACGAGACTGATTCCTCAGAGCGCTGAGGGCAGTGGCTGTCTGTGATTGCAAAGGACTGGCCAGGCCCGAGCTCAGGGGCACCACCTTGTGGCCAGTGGGGGCGTTGCACAGGGCAGCGGGACACAGCGCTGAATGGCCACGAGCCCCCAGCACAACATCACCCATGAGTACTACTGCAAGGTGAGCTTACGATTGGCTGACAGCGTGAGTGGCCGGACCACCCAGGAGTCACATGACATGGAGGTCAAAGGGCACATGATCACCGCCATGGGGCTGGGGGGTCCTGgTGAAGGCAGCAGGCACCGGGCAGAGCGCGTGTTGGAGCTGCAGGAGCGACGCCGGGTCCTTCAGGGGGCTCTGAGCAGCCggctgggggagctcaggagaCTGTGTCTACAGGAGGCTGAGCTCACAGGAGAGCTGCCCAGCGAGTTCCCTCTGGAGGCTGGGGAGAGACCCCCCCACGTGCGGCGCAGGGTGGGAGTGTCCCCTCGAGGCCCGGGCAGCAAGGGGGAGGAGGGGGATCCGTCTCGCAGGGCTCTGGGGACGGAGCAGCGCAGGAAGAAGTCTGGGCTCAGCGGCGCCCTCCACCGGCAGCCCAACACAGAGGCAACGGCTCAGAGCAAGAGGACCGTGCACCGCGGCTGCCACACCGTTGCAGatgaaGGGCTGGTCAGGTCTGAGAGCAGCTCTATGTCCGACTCCACTGGACATGACAGTGAGGAGGCTCCCCCCAGCTCCAGGGCTCCCCCCGAGTGCGTGTCCCCCTCGCGGCCCCGGCTGACCCCCAGCAGCCCGGAGAGCAGGCTGACCCGCAAGCTGTCGCCCGTGGAGATCTACTATGAGATGAGGACCCGCAGGAACTCGGTGGCCAGCTCTGCCAGCCCCAGCCGCTCTCTGCCCCGCAGTGCATCCAACGTGGAGGGGCGCAGCGTCCCGGCCACACCGCTGCTGTCCCGGCCTGggcccccccccaccacccaggCCAGgCTGGAGCCGTCCTGCAGTGTGGTGGCCGTGGGGGTCGGGGTGGCGGGGGGGGTGTGTGTCCGGCAGTGGGTGGACGCCCCCGACGCACCTGGACCGCGTCCCCCTGTGCAGACTGAGGGGGGGGCCGTGGGCGGAGGAGTGAGCTGTCAGTACGGCTCCCGGACTCGCCGCAGCAACAGCTCCGAGGCACTGCTGGACCGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73604 lncRNA upstream 46930 45512636 ~ 45513047 (+) True G58876
TU73534 lncRNA upstream 161524 45339605 ~ 45398453 (+) True G58821
TU73535 lncRNA upstream 227121 45329784 ~ 45332856 (+) True G58822
TU73548 lncRNA upstream 282381 45276488 ~ 45277596 (+) True G58830
TU73541 lncRNA upstream 284944 45266939 ~ 45275033 (+) True G58825
TU73708 lncRNA downstream 1635 45573270 ~ 45575964 (+) True AMCG00009760
TU73715 lncRNA downstream 10884 45582519 ~ 45584669 (+) False AMCG00009758
TU73710 lncRNA downstream 13123 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA downstream 13189 45584824 ~ 45585330 (+) False G58971
TU73754 lncRNA downstream 68000 45639635 ~ 45640037 (+) True G59006
AMCG00009757 mRNA upstream 28541 45521353 ~ 45531436 (+) True AMCG00009757
AMCG00009761 mRNA upstream 48940 45507767 ~ 45511037 (+) True AMCG00009761
AMCG00009750 mRNA upstream 82980 45466659 ~ 45476997 (+) True AMCG00009750
AMCG00009752 mRNA upstream 105998 45437969 ~ 45453979 (+) True AMCG00009752
AMCG00009751 mRNA upstream 124112 45422527 ~ 45435865 (+) True AMCG00009751
AMCG00009760 mRNA downstream 1635 45573270 ~ 45574076 (+) False AMCG00009760
AMCG00009758 mRNA downstream 4904 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009763 mRNA downstream 26972 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009764 mRNA downstream 71603 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009765 mRNA downstream 78449 45650084 ~ 45656237 (+) True AMCG00009765
TU73602 other upstream 50873 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 502103 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 908010 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 960649 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 989446 44567365 ~ 44570531 (+) True AMCG00009694
TU73851 other downstream 182951 45754586 ~ 45755115 (+) True G59084

Expression Profile