RNA id: TU73708


Basic Information

Item Value
RNA id TU73708
length 2551
lncRNA type sense_over
GC content 0.50
exon number 2
gene id AMCG00009760
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45573270 ~ 45575964 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTGCCCAGATGCCCCAGTCTGCCACCTTCCACGGGCACCCGCTGCAGGCCAGgtcatTGGATCTCTCTCTGTTCCAGGAGCAGCTCCACCCCCAGATGCAGGAGCTGAGTCTGTGTGAGCCGAGCTCTGACCTGCCCCCGCCCGGCACGCTggtgtgacacacacacacacacactctctctctctcaaactcaCACGCACTCATACAgactcacaaacacactcacgcacacagtAACATAccaacacactcacatacacatcCACTCTTGGCACACATGCCGGCACCCCCAAATGCACACAGGAGAGTGTGCCGTACTACCCTCCGCTCTCGCTGTCCAGGGCCTACAGCGGCCCTCGCTCACCGGGGCTGGACTTCACCCCCCGGCCCCCACCTCCACATGACTCCCAAGACGAGATGCGGTAATTAAGGGACTAATTACAATCATAATTAAACCCTGCTGCTTCCACTGCaagacaatgaaaaaaaacaaatacaactcaGGATGAGTTTGAAGAAAGATCTGCAACACAGAGGAATCCCTCGGGGCGGGACAGAACCCAGTGGAACCCAGAGGGACGGACTCGTCAGCGCGTGGGGAGGCAGGGTGGACCCGCTCTCTGCTGCAGGTCTTCGATGCAGTTGCACAAAcaatataattcatttttaatgttattttcttattgttgtaaacattttactttgCTGTCGTTTGTGCTTTGGGCTCCTGGATGGACTCTCCTGGGGGTGTGGACTCGGCTGGGCGTCCCGTCACTCCCCGTCACTCCCCGTCACTccccggggtgggggggtgtgcCTGGTCTATGGCTCTCTGCactgttgggggggtgggggtgcagcATAAGCAGGTCTTAtgtcatttaaagaaaaacaagtgagGATGTAAAATAGAgatctttaaatgtttgtttattagcttttattttgttttgggttcCGGCTGCGTGTCTCGTGTCCCTGAGTCTCAGCCCTgactattatcattatcatcatcagtgTGGGGAGCCAGTCTCTGTCTGGTGTCTGTTGAAACTGCCCCCCCACTCCCGTCAGCTCAGCACACTGTCCGTGCTGCTGCTTCACTCCAGCAGAGGGTGCCCTCtcgctcttctctctctctttctcccctgACCTGCTGTCCTGTACAACAGCTGGCCAGAGAACTGCTTCCTCCCTCTCATTGTGCACTGCTGCTCCTACTACtgaaaataatactataatacagCATCATCATTCACCTCCCTTGGACACTTTCCTCCTTCCAGCTAAGGGACTGGGACAAGGGTTTTGCTCCTTTCGCAAGTGTGAAGATGTTTATTCTGAGAACACtggttgtgtgtgagagagagagtgtcagtgtgagtgtgtgtattcaAACAGTAATATGCATAAAGATATTTAAAGTGCAAAAAACCCTTAGTGACAATAATGTTGCTACTGAGGTAAGGGGGTTTAATCCCCCCTTTCCACATCACTGTGAACAGAATACAGCTacgaacaacacacacacacagtgttacCTCAGGATCTCTGTTTGCATATAAACACACTAATTTTCCTGAACCAGTGTGTGCCAGacagagagtgtgagagagagggggaggggtgtcCAGTCCAGGCTACAGGGAGGATTCCCACTCACAATCACAATAGACCAGCATTATGAGTGGTGCCTGGTGCAGTACCGTTACTGAGCAGCAGGGGACAGTAATACATCAGTGATGATTTATCTTGAGCCCAGTCCTGCTCTACCTACGCTTTCACCTTCTGACCGCAACAGAACTGGGTTCAGCGACCTTTCACCTAGAACCCTTGAGGGTGACCACAGTGCAGCACCTGACCCGCTCACTGTGCTGGTGGCTGTGAGGGTCCTGGCAGCAGTCATGAGTGTTAATGAACCCATGAACCTACATCCTGTAGAACTCTGTCAGCAGACCTGTTGTCCGTCAATTCTGCCAGCATGAACCTCCATCTCTTCTATGCGCTGTAGGGAAACTGAGAACATGTGGAAATGACTCGAGAAACCAAACTGCTCACTCCTTCCAACAGCTGgtccaattaaacaattctAGCTTCTTTCGGTTTGCAAGTAAGTCATTCAGGGATTCCACTGGAACGGGTCTGCAGACACCGGGCTGTTGATGTAAGCGATGAGCACAAGGGAGGTTGAAGGTCAGAGGTCAGTCAAGGGCCACAGGCAGCGGACACGGGTGGATTAAATTCATGTGGACGGTGAAAAATAAGTACAGGACAGAAGAGCTCACCTTGAGATGACCACTTGtctattatttttgcatttgtgttttgttttctttaatttctttgtcacTGTTGTCCCTCCCTGGCTCTTTTTGgaattgtacttttttaatgtgtgtgtgtgtgtgttgggggggaggggttgatgtaaataaataaagtacataaataaataaatttgaagATAATTGTAGGAGTGGCTCCTGCAGTTTCAGGTGTCTCAGGGGAGAAGGCCTGTTTACCATGATTTGAATAAAGTGTCTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73604 lncRNA upstream 60223 45512636 ~ 45513047 (+) True G58876
TU73534 lncRNA upstream 174817 45339605 ~ 45398453 (+) True G58821
TU73535 lncRNA upstream 240414 45329784 ~ 45332856 (+) True G58822
TU73548 lncRNA upstream 295674 45276488 ~ 45277596 (+) True G58830
TU73541 lncRNA upstream 298237 45266939 ~ 45275033 (+) True G58825
TU73715 lncRNA downstream 6555 45582519 ~ 45584669 (+) False AMCG00009758
TU73710 lncRNA downstream 8794 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA downstream 8860 45584824 ~ 45585330 (+) False G58971
TU73754 lncRNA downstream 63671 45639635 ~ 45640037 (+) True G59006
TU73778 lncRNA downstream 97965 45673929 ~ 45674702 (+) True G59026
AMCG00009759 mRNA upstream 1015 45560291 ~ 45572255 (+) False AMCG00009759
AMCG00009757 mRNA upstream 41834 45521353 ~ 45531436 (+) True AMCG00009757
AMCG00009761 mRNA upstream 62233 45507767 ~ 45511037 (+) True AMCG00009761
AMCG00009750 mRNA upstream 96273 45466659 ~ 45476997 (+) True AMCG00009750
AMCG00009752 mRNA upstream 119291 45437969 ~ 45453979 (+) True AMCG00009752
AMCG00009758 mRNA downstream 575 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009763 mRNA downstream 22643 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009764 mRNA downstream 67274 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009765 mRNA downstream 74120 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009762 mRNA downstream 80797 45656761 ~ 45660486 (+) True AMCG00009762
TU73611 other upstream 1635 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 64166 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 515396 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 921303 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 973942 44584562 ~ 44599328 (+) False AMCG00009700
TU73851 other downstream 178622 45754586 ~ 45755115 (+) True G59084

Expression Profile