RNA id: AMCG00009762


Basic Information

Item Value
RNA id AMCG00009762
length 3726
RNA type mRNA
GC content 0.49
exon number 1
gene id AMCG00009762
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45656761 ~ 45660486 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTGTAAGCTTTCATGTTGAGCTCATGAACCTCATGGGTCGCTGCGTCACCAGTGATACTGTTAACTGTATTGCAGGCGTCACTCTGTGGGACCATGAAGAGCTGCAGAAGAACACCAATAAGCGCCCTCAGTCCAGAACAGACTTCAGTGTCTCTGCCTCGGACTCCATTGAAGACAAAGCTTTGTCTCTGAAGGTGAACGCCTCCCTCAAGGCCAGTCTGCTGGGGGGGCTGGTAGAGGTGGAGGGAGCGGCCAGGTACTTCAATGACAAGAAGAAATCTGCCAGCCAGGCCAGAGTCACCCTGCAGTACCACACCACCACCAGGTTTGAGGCTCTAACCATGAGTCACCTGGGCAGAGGGAAGGTGTCCCACCCGTGTGTGTTCGAGGACAACTCGGCGACGCACGTGGTCACGGCCGTGCTGTACGGGGCGCAGGCTTACTTCCTGTTCGACAGAGAGGTGTCTACAGAGGAGAGCAAACAGGATATCAAGGGAGAACTGAACATCACTGTAGCCAAGCTGAAAAACTTCACAATTGGTGCCAAAGGCTCTGTAGGTCTGTCAGAAACTGATAAGAAATCCATTGAGAAATTCAGCTGCACATTTTATGGGGATTTCCAGCTGCAGGCCAACCCGTCCACTTTCACAGAGGCAGTCACAGTGTACAGATCCCTGCCCTCGCTGCTGGGGGCTGAGGGAGAGCGTGCGGTGCCCATCAGGGTGTGGCTGTACCCCCTCAGCAAGCTGGACTCCAGGGCTGCCAGGCTTGTGAGGAATATAAGCAACCGCTTTCTCAAAGAGTCTCAGACTGCCATTGAGGAGCTGGATAAGACTGAGATGCAGTGCAATGATCTGCTCAAACACACAGTGTCCCAGACATTTCCTGAAGTCCACCTAAAGATAGACAATCTGAAGCAAATGACTCACCAGTACAAGCTGCACTTCACAGACCGTTTAGCCAGTCTTCTCCCAGCCGTCCgaggaggaggaaaagaggAAGACGAGCTCAGAGAGGAAATTAAACAATACCAAGAGTCTCCTTTCAGCTTTCAGAGACTCAGTTTCTGGCTCAacaataaagagagagagatggatgcaATATTCAGGTTTATTCGTAAATTGAAAAGCCCTGGTATAAAGATCCTGTCTTCAGAGGCAGAGCGAGAGGAAGTGCTGTTTGACATTGATGTTGACACTGTGGTTTGTTTTACCTTCACCTCACTGCACCAGCCTGAGCCATTCCTGTCAGAGCTGGCCAGCTGCCTTAAACACCCTGAGAGCCGGAGCACCGACACGTACACACAGCAGGCCAGCGCCGAATGGATGAGCCAGGAGTCGCTTCACAAGATGCGAGAGAGTCTGACATTATTCCTCGAGTTAGAGCGCCTCAACAAGGACAAAGACAAGATGAAGTTCTATGTTGATTCTAAACGAGACGAGCAGCGCCCAGCAGCGTGCATTGTCCTGTATGACAGTGGATGTAGTGAAGGGATGTATTTTGAGCCTCCGTCAAGGCCTGACTCCCCTGGGGTGACTGCAGTGACACCAAGCACAGTGACAGTACAGCTGCCCCCCTCTGACAGAGCCACAGAGAAACGCAGGGTGGAGTATAAACGCCAGGAGCAGCAGGAGTGGATATCCCACCCTGCCACAGGCACAGGGGACACCCTCACCCTGACAGGgctgcagacagacactgtGTACGAGCTCAGATCCACAGCAGTGGGCAAGCTGGGCTACACTGAGAGCAGTGACATCACCACAGTGAAGACTCCTAGAGCAACAAGCCCACCTAAAAGTCCTTCTGCTCCTCAGGCTTCTCCAACTTCCATTAAGATAACCTGGGAGAGGCCGTCTGTCGTTGGAGAGGGGGTCTCCATACAGGGATACATCATCGAGTACAGAGAGGAGAAGGAGCACAGGTCTGTTCAGTGGGTGCAGAAGAAAACTGGGAAAGAACAGTATTCATTCACAGTGGGAGGTCTGACCATGAACACGGCCTACAAGGTCAGAGTGCGCTGTGACTGTGGAGAGCTCGGGACCAGCGCACCCAGTGAGGAAGTGCCAGTCAGGACACAGGGGAAGAAGACTTTGGAGCGAATTCAAAGAAACCCTGAAAACTACACTTTAATAGAAGAGGGGAAACCTTCCCTTTACAGACTCAATCTGATGCACTCTAAGGAGGGGTTTTGCTGCAAACGCAGCTTTGGAAGTCCAGGACTGAACGAGAAGAACCGAACGATCATGGTTCTGGGAGCGACCGGGTCCGGCAAGAGCACCCTCATCAATGGCATGGTCAACTACATCCTGGGAGTGGAATGGGAGGATGAGTGCAGGTTTAAACTGGTACATGAGGACACCGGCAAAACACAGGCAGAGAGCCAGACCTCTGAGATCACAGCCTATCAGATCTACAGCAGTGAGGGGCTCAAGGTTCCTCACTCCCTCACCATCATAGACACTCCTGGGTTCGGGGACACCAGAGGCATCAAGCAGGACAAACTCATCACTGAGAAGATCAGGCAGTACTTCTCTGACCCAGATGGCATAGTCAGTCTGGACGCAGTGTGCTTCATGGTGCAGTCTGCTCTGGCACgcctcacacacactcagaaaTACATCTTTGACTCCATCCTCTCTATTTTTGGAAAGGACATTGCTGAGAACATTGTAGTTCTTGTGACCTTTGCTGATGGAAAGAAACCTCCAGTTCTAGAGGCCATTAAAGCTGCAGACATTTCATGTGCCAAAGAACCAAATGGCACTCcagtacatttcaaatttaataaCTCGATCCTGTTCTCTCCTAATGAAAGACTTAAGGAAAGCTCCACTGACAATGACTTTGATAAAATGTTCTGGGAAATGGGCACCAGCAGCATGCGTGATTTCTTTTATCATTTAAGCAGCATGACAACCCAGAGTCTGCAGCTGACTAAGGCAGTTCTCACTGAACGCAAACAGCTGGAGGTGTGTGTAGAGGGACTGCAGCCCCTGATCACAATTGAACTGACAAAACTGGATGAGATCAATAAGATAAAAGAATCAATAAAACACCATCAGGACTGTATAGAGGCAAACAAGGATTTTGAGATTGTTGTGGAAATCACAGTGCCAAAAAAGGTATCTATCAAAGGTACTAAAACATTTGTCACCCACTGCTTTCAATGCAACTTCACTTGCCACTATCCCTGTCAGTTTCCTAAAGATGGGGACAAGAAAGGCTGTGCTGCCATGAACTCTCTCACTGGAGATTGCAAAGTTTGTGTTGGAAAATGCAACTGGAGTGTTCATGGTAACGTTGATTATCATATAGAGTACGAAAcccagaaaacaaagaaaacctaTGACATCCTGAAAGCCCAGTATGAAAAAGCCCAGGCAGAAAAGCTGAGCGATGAGGGCTTTTACCAGTGCCTTGAGAAAGAATACGATCAAGTACAAGAAGATGTTTTGGAATTAACTCAAAAGTTATCTGCCAGTCTGACACGTCTCAAAGAGATCGCTCTTCGACCCAACCCCCTGTCCACTCCAGGTTACATCGACTTGCTGATAGAGGCTGAGGAACAGGAAGCCAAGCCTGGGTTCCAGGAGCGCATTCGAGAGTTAAGgagtgtgaaagaaaaagctGAGATAGAGGACAGATTTTCTAGAGGAGAATATGCTTCCAGAAGGACAGAGGTTGATCCAAAAGATCAACATAAATCTGTGCAAGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73754 lncRNA upstream 16724 45639635 ~ 45640037 (+) True G59006
TU73710 lncRNA upstream 71431 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA upstream 71431 45584824 ~ 45585330 (+) False G58971
TU73715 lncRNA upstream 72092 45582519 ~ 45584669 (+) False AMCG00009758
TU73708 lncRNA upstream 80797 45573270 ~ 45575964 (+) True AMCG00009760
TU73778 lncRNA downstream 13443 45673929 ~ 45674702 (+) True G59026
TU73780 lncRNA downstream 15217 45675703 ~ 45683641 (+) True G59028
TU73805 lncRNA downstream 41481 45701967 ~ 45702889 (+) True G59047
TU73840 lncRNA downstream 85455 45745941 ~ 45746254 (+) True G59076
TU73845 lncRNA downstream 87034 45747520 ~ 45748462 (+) True G59078
AMCG00009765 mRNA upstream 524 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009764 mRNA upstream 9220 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009763 mRNA upstream 27383 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009758 mRNA upstream 72034 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009760 mRNA upstream 82685 45573270 ~ 45574076 (+) False AMCG00009760
AMCG00009772 mRNA downstream 215147 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009778 mRNA downstream 244401 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009780 mRNA downstream 258945 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009782 mRNA downstream 320603 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009781 mRNA downstream 339556 46000042 ~ 46021930 (+) True AMCG00009781
TU73611 other upstream 85126 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 147657 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 598887 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1004794 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 1057433 44584562 ~ 44599328 (+) False AMCG00009700
TU73851 other downstream 94100 45754586 ~ 45755115 (+) True G59084

Expression Profile