RNA id: AMCG00009763


Basic Information

Item Value
RNA id AMCG00009763
length 7649
RNA type mRNA
GC content 0.59
exon number 34
gene id AMCG00009763
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45598607 ~ 45629378 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCCGTGTTCAGTGTGCAGTGGGGCCCCATGCGACTCTGAGCACGGGCAGAAGCTGCTCCCTGTGTCTGGGCTGCTACTGCCCCAACTCCTtcccctcctgctcctgctcctcggccctCTGCCCCTCGCCCCGGTGCGGCCCTGCGCAGCTGCCCCCAAGGAGATCGACCCCTCCGCGGCTAGAACCATCATCGGCACGGCCACTGCCCCGGCGCTGGTGGTCTTCGAATCGCCCCACTCCGCCCGCCTCAACCACCTCCTCCTGGATGCGGTGTCAGGGCAGCTGTACGTGGGGGCCGTCAACTACCTCTTCCACCTCTCCCCTGAGCTCGTCTTACTGTCCTGGGGCAGCACCGGCCCGCACCTGGACAGCCCGGACTGCCTGCCCCCCATCGGCTCCCAAAACTGCCCCCAAGCCAGTGAGACGGACTGCGCCAACCAGCTGCTGCTACTGGAGCGGGCTGGGGGGGGCGAGGGCTGCCTGATTGTGTGCGGCACTGTCCTGCAGGGCATCTGCGAGAAGCGTGCGCTGCGCAACGTGTCCGAGGTGCTGTACCACACGGCCAACCCGGTGGACACGCAGTATGTGGCGGCCAACGACCCCCGGGTGGCCACCGTGGCTGTCCTGGTGGAGAGGGGGTGGGGCAGGGGTGCGCGGCGGCGAGGCAGGGGACAGGAGGATGAGGGGATCCTTGCCGGGGAGGAGGACGgctctctgctgctgctggtgggcCGCGGCTACACCGCTAAGGGTCCCGGCGGCATCCCCCCCCTCACCACGCGCCGCCTGGCCCCCAGCCCCAGCCTGCCCGCCCCCGCCTTCTCGCATGAGGATCTGGGCAAGCTGGTGGTGGGCAGCCCCTCAGAGTACAGCCCCCGCTTCGTGGCGGCCCTGGGCCATGCAGGTCATGCCTACTTCGTGTTCACGCGGCGCAACGTGCGGGGGGCCCGCGAGCAGCGCAGCTACGTGGCACGGGTGTGCGGCGGGGGGGACCCCGGCTTCTACTCCTACGTGGAGCTGCCCTTGTCCTGCGAGGGGGCGGCGGGGGCCGAGGAGGATCCGACAGCGGGCAAGGATAGAGATGGAGGAGGTGACATTGGGGGCTTCAGTCTGGCTCGAGCCGCTTCCCTGGACACCCGCCTGGACCCCCCCACTCTGTTTGTGGTGCTGGCCAACGCCTctcccccccccagccccgcGCCCACCTCCGCCCTCTGTGCGTACCCACTGCCTGACCTGGACGCGGCGCTGAACCGTGCGCAGCTGTTGTGCTACAGCCAGGAGGGCCGGGGCCCCGAGGGCGAGGAGGAGGCCTACATCGAGTACGAGGTGTCGTCCCAGTGCCTGCGCCTGCCACAGgaGTCGCTGAAGGAGTACCCATGTGGCGGGGAgcacaccccctcccccatcgCGAGCGTGCGCCCCCTCCGGGCCACGCCTGTCGTCACCATGGAAGCGCAGCTCTCCGCTGTTGTGACGACGACTGAGGCAGGGCACACTATCGCACTGCTGGGGGACAGCCAGGGCCAGCTACACAAGgtgTTGGTGGGGTcgggtggggagggagaggtATATGACAGTGTGCCGGTGGACTCGGGTTCTGCGGTCAGTGCCGACCTGCtgctggacagagagagagagagcgtctATGTCATGACCAACACCAAGGTGTCCAAGGTGCCGGTGTCTCTGTGTTCCCAACACACTgactgtccttcctgtctctctgccaGAGACCCCTACTGCGGCTGGTGTGTCCTAGAGGGCAGGTGTTCCAGGAAGCTGGATTGCTCGCTCCACCAGCGGCCCAATCACTGGCAGTGGAGCTATGACCGCGGAAACCAGTGCATTGCAGTGGAGACCATCACCCCAGCCAATCAGAGCCGAGAGGAGCCAACTCAGgtgtctCTCTCAGTTCCAGGTTTGCCTTCTCTCTCGGAGGCGGAGTCTCTCTCCTGCGCTTTCGGGACCCTCCCCGCCGAGCCTGCCATCgtcacagggaacacggtcaGCTGTCAATCACCTGCACCAGAACACCTCCCCCCTAGTGAGCCGGGGAAAGACCACGTGTCGGTCATCGTGCGGGTGCTGTTCAGAGAGGTCACCCTGGCCAGTTCCCCTCTCACCTTCTACGACTGCGGAGCCACAGCCCAGCTCAACAGCACCTCCCCATGTGTGGCATGTGTGAGCAGCCAGTGGGGGTGTCACTGGTGTCTGCTGGAGCACAGGTGCACCCACAGAGAGAGCTGCCCGGGACAGCACCTCATATACAATGCCCAGTCCAGCTGGTCCTGCTGGGGAGAAATCTGCAACTGTATGAGGGCGCGGACGCTGGGTACCGTGCGTCTGTACGACTGTGCGGTGGGTCAGACAGACTGCAGTCAGTGCCAGGCTGTGTCAGATCAGTTCGGCTGTGTGTGGTGTGGGGGGGCCTCCCCCAGCTGTCTCTACCACAAGGCCTGCACCAGCGCCCCCCAGGACACCTGCCCCGCCCCCCACGTCACACAGATCGAGCCCCAGACAGGCCCGGTGGAGGGGGGTATCTCCATCACCATCCAGGGCTCCAACCTGGGTCAGCGCTTCCAGGACATCCAGGCTGGAGTGACCGTGGCTGGGGTGGGCTGCGTACCCCTGCCCCAGGCTTACCTCATCTCCACCAGggtgGTGTGTGAGTTGCAGCACAGCGCTGGGGAGCGTCAGGGCCCAGTGACAGTGAAGGTGGGGGATGGAGAACCTGGCCAGTCCACACAGAGTTTCACCTACCAGgaCCCTCAGCTCAGCGGGGTGTCTCCGATGCGGGGGCCTCTGGCGGGGGGGTCAACCCTCACGCTGCATGGCTCCAAACTGCACACGGGCCGCAGGGAGAACCTGGCCGTCTACACCGGCAACACGCCCTGCGTCATAGAGGGCGAGGTCAGCGACACGCAGTTGGTCTGCCGCACCAGCCCAGCCAATCAGACCGCAGGGGTGCAAGTCCGGGTGCTGTTCGGCCAGGCAGAGAGGATCCTGGGAGATGGAGAATTCCACTTCGTGGAGGATCCAGTCATCACTGAGGCCAACCCTGCGGCCAGCTTCTGCGCAGGGAAGCGTCTCAGCCAATCAGCCGGCAGGAACGCCAGCACTCGGCAGGAGACCTGTGAAGTCCTTTCCTCCGATCGCATGACCTGCCCGTCACCCCCCGTGGACGAGAGGTCGGAGGTCACAGGGTTGTGGTTCCAGCTGGACAACGTGCGCGTGGATTTCGAGAGCGTGGCCGGGGGCCCCTTCACCTACCACCCCAACCCCCAGCTGATCCCCCTGAATCTCAACTCCCTCTCGCAGCCCTACCGCTTCAAAGCCGGGGGGGTCATCGCTGTGgagGGCTCTGGGCTCACCCTGGCCATGACCCGGGAGGAAGTGATCGCTCGGGTGGGGCAGGAGGAGTGCGAGGTGAAGACTCTGGACGACACTCGCCTGTACTGCGAACCCCCCCCGACCGAGCCCAGCCCCGATGGCATGGACAGCCTGCCCGCACTCACGgtGGTGATGGGCCGGTTGCAGTTCTCTCTGGGCTTCGTGCAGTATGACAGCGACACCCCCTCTCCCTTCCCTCTGGCCGCTCAGGCTGGGCTGGCGGGGGGGACAGCCATAGTGGTCCTGGTGGTTTTGATCACCTGATGACGGAGATGATGGATCTGAACAGTGACCTGGGCGGCCCTGGGATCCCATTCCTGGAGTACCGCGTCTACGCCGAGCGTGTCTTCTTCCCCGGCCAGCAGGGGGGGGCGCTGAGCCGGCGTCTGGAGCTGCCCGAGGGCCGCAGGGCCACCGTGGAGCAGGGCCTGACTCAGCTCTGCGCTCTGCTCAACAACCGCACCTTCCTCGTCACAttcaTCCACACCCTGGAGAACCAGCAGGGCTTCTCCCAGCGCGACCGTGGCTGCCTGGCCTCTCTGCTCACGCTGGCGCTGCACGACAAGCTGGAGTACTACACCGACGTCATGAAGGGGCTGCTGGGGGACCTGGCTGAGCAGTACGTCGCCAAGAACCCCAAACTCATGCTGCGCAGGACAGAGACTGTGGTGGAGAAGATGCTGACCAACTGGATGTCCATCTGTCTGTACTCCTTCCTCAGGGAGGTGGCTGGGGAGCCCCTGTACATGCTGTATCGCGCTATCAAGTACCAGGTGGACAAGGGCCCGGTGGACGCAGTGACCGGCAAGGCCAAGCGCACACTCAACGACAGCCACCTGCTGCGAGAGGACATCGACTACTGCGCCATGactctgaCCGTGCTGCTGAAGAGCGGCTCGGAGGTGCAGCCCAGTCCAGTGCGGGTGCTGGATACGGACACCATCACCCAGGTGAAGGACAAGATCCTGGACCAGGTGTACAGGGGTGCGCCCTTCTCCCACCGGCCCAGCGCAGACTCCCTCGACCTGGAGTGGCGCTCGGGGCAGGCGGGTCACCTGACCCTGTCTGATGATGACGTCACCGCGGTGGTACAGGGCCGCTGGAAGCGACTCAACACCCTGCAGCACTACAAGgTTCCCGACGGGGCGACTGTGGCCCTGATCCCTCGCTCTCAGCCGCCGGTCCAGCAGGGAGTCAGCCAGGTGTTCCAGACCGGAGAGAAGACCCCCATGCTGGAgggtgaggaggagggggggctgCGGCTGTGGCACCTGGTGAAGTCCAGCGAGGAGCCGGAGATGCCAAAACACCGCAAGAGCAgcgtgagggagagggagcgcgCCAAGGCCATCCCCGAGATATACCTGACCCGCCTGCTGTCCATGAAGGGCACGTTGCAGAAGTTCGTGGACGATGTGTTCCTGGCCATCCTGAGCGCCCGCCACCCCGTGCCCATCGCTGTGCGCTTCTTCTTCGACTTCCTGGACGAACTGGCCCAGCGCCACGGCATCATGGACCCCGACACCGTCCACATCTGGAAGACCAacagCTTGCCCCTGCGGTTCTGGGTCAACATCCTGAAGAACCCGCAGTTCGTGTTTGACGTCCAGGTGCCGGACAGCGTGGACGCCGTGCTGTCCGTCATCGCGCAGACCTTCATCGACTCCTGCACCACCTCTGAGCACAAAGTGGGCCGGGACTCCCCAGTGAACAAGCTGCTGTACGCCCGAGAGATCCCGAGATACAAGCAGCTGGTGGAGAGGTATTACAGTGACATCCACAGCACAGTGTCAGGATGCTACCAGGAGATGAACTCCACTCTGACTGAGCTGTCTgggAGCTTTGCTTCGGAGATGAACAGCACACTGGCTCTCCACGAGCTCTACAAGTACATCAACAAGTATTACGACCAGATTATCTtggccctggaggaggagcCTGGGAGTCAGAAGATGCAGCTGGCCTATCGGCTGCAGCAGGTCGCTGCCCTAGTGGAGAACAAGGtcactgacctctgaccccgcTGTGACCCCGTTTGGAGGACAAAGGGTCGGATGGACAAACCTACAAACGGACTGATTGActgtgggggggaaggggggggacacattctgacacacacacacacacacacacacacacacactctacactGCACCGCTCCACACTACGGTAGACGCACACACCAGTTCGGTTGGGAGTTTTAATGTGTGAACATgattgtatatatgtgtgtgcctGAGATGCGCTTCCCTCTGTCCAGTGACTCGGCGTCCCATAAACGACAGGAGCCCAGCTCAGTCTGGCACAGAGACGCGGCACTCATTCGCACAGCCACGGGGCTGTTGAAGTGTAACGGACTGTGGGGAGGGCTGtctgcacacacatgcacacagacacacacagatttgTGGTGGACTGTTCCCAGAGTTCTGTGCGGgggctgttgtgtgtgttggggggggttcTCTCAATGCCTCACTGACTGACATAACAGCACTAGAATCAGCTGCTCTGTAAACCTCTGACCGGTGAACACTGGACACAGACccgtcacacacacagtagttgactgactgactgttacACCTGCACACTGGATCCTGTGTAGCAACACACCTGAATACACCACTGAGTGATGATCATGTATTGAGTGTTCAGACACCGCTCCTCTGcactgtgacctctgacctctgccCTGTgtgtcctcctctctcctccgcCCCCCCTGCCCGAGCTCGGAGCTCTTGCACACTGTCACTGCCAGATTGTACCCCACTGCTGTAAATAGCGCTTATTTATACTAAAAGCCAAATGTGCCTTCTGATTCTATAAAAGCACAAGCAACTCCCTCCGTGGCGAAACCCATCCGTCTGTCAGAAAATTCAACTGAAGAAAGTCATTCAAATAAGCAGCAAATCGCACTGGACCGTATTACGCGACGAAATCTGAaaccaaataaaagcaaaaagaaaagagacGAAACAAAGTGACAATGGTCAGTCCTTGTGTCCGGCTCAGTGCACatgaataagaataatagtaatagaCTGGAAGCACAAGTAGCCAAAGTGATGCTCtgtctgagagggagagggggagggtgcTGGGAGAGTGCCAGGGTCTGTGAGAGACTGGCAGGGAGCTCCCCGTGGCTCTCGCCAGCAATCACTGGACTGTGATGATGGCTGACACGAACTGCTGATGTAGAAAACTGGAAGCCTGTGTCCTGCTGTGCGTGGTggctctgtgtccctgtgctggggagtcagtttttgtttttgctctgaaaaccatatttatttgtgtattttaatgtatgcatttatccTTTGTGACGCGTCCAGCAGTGCTTCTGTGCTGTAGGGGTTAGCAGTTGTAGTTGTCTGGAGTTCGTCTGCAGCTTCTGAAGATCATCGTATTAAAttgttacacacacactaatatcCATACATCTGAAATTATATgtatagacattttattttgagcttttgtaatttattttgtaagtttcCACACCAGCCGCAGTCTTGTCCCCGGTCCCAGTGCAGTAGTGCTCTTCTGGTCTGGGGCCCTGTGTGCCAGGGTTAGTGCGCTgtactgtgtgtcagtgtgagggtgtgtggGGGCAGCGTGGGTGCGATGCGAGTCTCTGGTCATATATCCCAGTTCAGTTACAAATATTATCAGACACTttatccatattattattattattattattattattatcatcatgatcattttgtatttatttgtattagtatttatttattttcctgtttaaaatcTGCAGGtattgtctttctctctttatatatatatatatatatatatatatatatatatatatattctcccTCCCAATGTGAACTGTCAGCTGTCTGTTGCTGCCATCTCTGTACCAGCACAAGGAGagatgatacacacacacacacacacacgtctatTTATAGTCATTCCTGTAGTTTAAGGTCCCCCCAGGCCAACCACTAAGACCGCCACTCTGGTCCCAGTGTCCCCAGTACAGAGACCAGGCCTCCCTCCCCTACTTTTGCATTGTGTATAGTTTTCCAAGTGTGAGTGAGTACGTGTTTGTGTGCGAGTGCGGGAGTGCGTGTCTTTATCTTGTCTGTAAATACTGGCATTATGCTCTTACCGTCTCCctggatgtatttattcactgtGTCTTTGGAATAAAACGAGTGtggaaaacaacatgaaaaaataaaccatttaaataagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73710 lncRNA upstream 13277 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA upstream 13277 45584824 ~ 45585330 (+) False G58971
TU73715 lncRNA upstream 13938 45582519 ~ 45584669 (+) False AMCG00009758
TU73708 lncRNA upstream 22643 45573270 ~ 45575964 (+) True AMCG00009760
TU73604 lncRNA upstream 85560 45512636 ~ 45513047 (+) True G58876
TU73754 lncRNA downstream 10257 45639635 ~ 45640037 (+) True G59006
TU73778 lncRNA downstream 44551 45673929 ~ 45674702 (+) True G59026
TU73780 lncRNA downstream 46325 45675703 ~ 45683641 (+) True G59028
TU73805 lncRNA downstream 72589 45701967 ~ 45702889 (+) True G59047
TU73840 lncRNA downstream 116563 45745941 ~ 45746254 (+) True G59076
AMCG00009758 mRNA upstream 13880 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009760 mRNA upstream 24531 45573270 ~ 45574076 (+) False AMCG00009760
AMCG00009759 mRNA upstream 26352 45560291 ~ 45572255 (+) False AMCG00009759
AMCG00009757 mRNA upstream 67171 45521353 ~ 45531436 (+) True AMCG00009757
AMCG00009761 mRNA upstream 87570 45507767 ~ 45511037 (+) True AMCG00009761
AMCG00009764 mRNA downstream 13860 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009765 mRNA downstream 20706 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009762 mRNA downstream 27383 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009772 mRNA downstream 246255 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009778 mRNA downstream 275509 45904887 ~ 45913188 (+) True AMCG00009778
TU73611 other upstream 26972 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 89503 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 540733 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 946640 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 999279 44584562 ~ 44599328 (+) False AMCG00009700
TU73851 other downstream 125208 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069549 False 3625 mRNA 0.51 23 NC_007119.7 8238727 ~ 8282555 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_09037913_09074257.mRNA True 5536 mRNA 0.52 33 CI01000010 9037873 ~ 9074257 (-)