RNA id: TU73855


Basic Information

Item Value
RNA id TU73855
length 403
lncRNA type sense_over
GC content 0.63
exon number 4
gene id AMCG00009769
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45748676 ~ 45757951 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGGCGGGGCTCATCCAGAGGCCCGGCAAGCGTCCAATCAAACGGCCAGCCCGACACCACAGTGATGCAGAGGAGAGTCTGGACGAGCAGGAGACCCTGGGGACGTGCTTCAAGGACTCAGAGTTCATCTACCCCTCCCTGGAGTCTGATGAGGAAGACCATGCCCTCAAATCAAAGGCAAAGAGAAAGAAGAACTCTGATGACACACCCTGGAACCCCAAAGcGCGAGTGACCCCCACGTTACCGCGGCAGGAGCGGCCGGTGAGAGAGGGGGTGCGCGTGGCCTCTGTGGAGACCGGACTGGCTGCCGCCGCCGCCAAACTCACCCAGCAGgagCAGCAGAAATCTACCAAGAGGAAGTATGTGAAGAAGCGCgccgcccccgcccccccgccgcCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73857 lncRNA downstream 1648 45747557 ~ 45748458 (-) True G59090
TU73841 lncRNA downstream 3852 45745941 ~ 45746254 (-) True G59077
TU73798 lncRNA downstream 69986 45675703 ~ 45680120 (-) True G59042
TU73774 lncRNA downstream 85265 45664474 ~ 45664841 (-) True G59022
TU73755 lncRNA downstream 109996 45639279 ~ 45640110 (-) True AMCG00009766
TU73869 lncRNA upstream 8738 45759711 ~ 45763140 (-) True G59099
TU74008 lncRNA upstream 156281 45907254 ~ 45908142 (-) True G59191
TU74023 lncRNA upstream 157608 45908581 ~ 45915868 (-) True G59202
TU74025 lncRNA upstream 157608 45908581 ~ 45964055 (-) False G59202
TU74073 lncRNA upstream 310520 46061493 ~ 46112681 (-) True G59236
AMCG00009768 mRNA downstream 11276 45705867 ~ 45738830 (-) True AMCG00009768
AMCG00009770 mRNA downstream 45596 45701933 ~ 45704510 (-) True AMCG00009770
AMCG00009771 mRNA downstream 54844 45683560 ~ 45695262 (-) True AMCG00009771
AMCG00009767 mRNA downstream 71251 45678241 ~ 45678855 (-) True AMCG00009767
AMCG00009766 mRNA downstream 107362 45637977 ~ 45642744 (-) False AMCG00009766
AMCG00009773 mRNA upstream 12204 45763177 ~ 45771249 (-) True AMCG00009773
AMCG00009776 mRNA upstream 23896 45774869 ~ 45781213 (-) True AMCG00009776
AMCG00009777 mRNA upstream 31270 45782243 ~ 45799948 (-) True AMCG00009777
AMCG00009775 mRNA upstream 50429 45801402 ~ 45811884 (-) True AMCG00009775
AMCG00009774 mRNA upstream 114927 45865900 ~ 45869735 (-) True AMCG00009774
TU73631 other downstream 426156 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other downstream 426784 45320843 ~ 45323322 (-) False AMCG00009748
TU73318 other downstream 964972 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 1183272 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 1207297 44541894 ~ 44542809 (-) True G58584

Expression Profile