RNA id: AMCG00009778


Basic Information

Item Value
RNA id AMCG00009778
length 2442
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00009778
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45904887 ~ 45913188 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCCGCTAATGAATGAATCAAATAACCCCCTCTGCCTGGTCTCCGTCACTGCTCGGGACTTTCCGGCGCGGATTGCCGTGCGCTGCGCCCATTGGTCCGCCGCTCGGAGGAGGCGGGTCCGGGCCGCCCGTGTGCCGGAGGCCGCTCTCACCTGCGCAGCGCTGTGTTGTGTGCGTCTCCCCCGCAACACGGCCCGTCGGGCCTGTCGGGTCGTCTCGGGAGGCTGTCAGGGCAGAGACTCGCTCGCTGTGCAAACGCTGCAGCTTTACCGGCGTGTCCGCGGCGACCTTCCTCCCCGGAGCAGCGACCTGCTCGCCCGGTGCCTCCCTCGTCACCCGTGTTTGTCCTGTAAACTGTCCGCCCGGCCGCGCCGCAGTGGGAGAGACGGGGGTGTAGTCAGACTGCAGCCTTCACTGCATACACTGAGGCTGCGCTGTAGCGCCGGGCTGGAGGCTGTCGGAGCGGCCAGCACCCTCTGCCTGGGTGAGACGCGCTGTGCTGAGAGCATGAGGCTGGCCGTGGGGGCCACCTGGATCCTCGCCAGTGCCATACTGGGAACGGACGGGGGCATTGTACTGGTGCGGCAGCTACTGAGCGctcccaATGATCAGCCCACTCCAGAGCCGCGGCCGCGCAGGTACAAGTGTGGGCTGCCCTCCCCCTGCCCTGAGAAGCACTTCGCCTTTCGCATCGTCAGTGGAGCCGCCAATGTTATCGGGCCCAAGATCTGCCTGGAGGACCACATCCTGGTCAGCAGTGTGAAGAACAACGTGGGTCGAGGGTTGAACATCGCTCTGGTCAATGatgtGGGGGAGCTGTTGAAGCTGAACGAGGAGGCGCGCCGGCTGTTCGAGGAGCTGGGCAGCAGTGCGATCAGGGAGCTGGCCTTCAGGGACAGCTGGGTGTTTGTGGGGGCCAAGGGCATCGACAGTAAGAGTCCCTTCGAGCAGCGGATGAAGAACAGCAAGCTGACCAACAAGTACGAGGGCTGGCCTGAGGCGCTAGAGATGGATGGCTGTGTGCCGCAGCGCCCCCCCGAGGAGGCGTAGCCACATGGCACGGCGCCGGCACAGCGTCCCACGGAGACGACGGGGGCAGGGGGGGCAACTGACGGTCCAAAATAAACAGCAAGTGAACTGTGGGGGAAGAAACCTGAACTCATACTGCACTGCTGCCCCCAGGGACTGAAATGCCCctatacccccccaccccaggacTGGCTGTGTGTGGCAGTGAGGAGGGGCAGCTGCCCTTCAACTcgtgtgtgtatgggtgtgtgtgggtgttgggAGGGGCGCACGCAAGGCTCTCTTggtagaaaatgtatatatatatatttttttgtatttacttttgtcCGTCAGTGACTGGGCCGCTTCGGGACAGCAGCTAGTTCTGGACACTGTTGTGGAGTGggctggggggggtgggtgtCGGTCCTATCCGAGGGGCCGCAGTGCTGGGTGAGAGTGGGGTGGACTGGTGCTGATGCTCATGGGGGTATTGTGTGACTTGCCCAGCCTGATGGGGAAGACATGAATCCAATCTCAAATCCAGGCCCAGTTTGTATGCCCCTGTGTCAGAAAAGCTGTAAGGTTTGATTTGCTGCAGTCTTCTGCAGTAGGACCAGTCTGTCAGTAATTTGGTTACGATGGGCACGGCGTACTCCACTCTTCAGGTGTGGCGAGGTGTCCCGGTCGGGACCACGCGGCGAATAATGGACAGAGCTGCCATTTCTTCCTCTGAAAGCGCAATGGCGTGTCGCAATGTTCGACCCCGGAGTTGCGAGCTGCTTGTTgatgttcagtgtgtgtgtgcgtgtgcgtgtgctcACTTCATAAAACTGTCAGACCAGACCTGGGCCTGTCTTTGGAGAATAAACCCTCAATGACActtctcatttgtttttatatgaataaatgtgCATTTGCTGTTCCTCTAGACCCTAcgtgatctctctctctccgtttaTATAACACTGCACAATCCCATAATATCTGCTGTAGTGAACTGAACGAGTGCGGTTGGCCGAGGACGATCACGGTGCTGTGGGTTCAATGCTGGGCTGCAGCGGCAAGGTCCGTCCTGCGGGGGGAGACTGTGTGAAGCGCGTCCTTCACAGGACTGAGTGTGGTGGGTGGCCACAGGAGGAGTGCAGATAGAGCGCAGCAATGGGGTTCATGAGTGGGGCATCAGCACTGCAGCCGTGGCTCATATTCACAATGCTGCTGTGAATAGTttattatacagttatatatattatactcaCAGTACACAGTGAACGCACAGTGTCTGCACCACGAGAGGCCCGTGTGGCCGAGGAGTGTGCTCAAGAACTGAGGCATTAGCTTTTCAGTAATTATACACCCCCTCACTTCCTCACATCCCCACACACTTCCACCGTGCACTGCCAGCACAGCCTGCCTCTTCTGTACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73912 lncRNA upstream 30455 45874123 ~ 45874432 (+) True G59128
TU73858 lncRNA upstream 141749 45759675 ~ 45763138 (+) True G59091
TU73854 lncRNA upstream 146618 45757110 ~ 45758269 (+) True G59087
TU73853 lncRNA upstream 148117 45756252 ~ 45756770 (+) True G59086
TU73852 lncRNA upstream 148931 45755589 ~ 45755956 (+) True G59085
TU73930 lncRNA downstream 31444 45944632 ~ 45997710 (+) False AMCG00009782
TU73927 lncRNA downstream 79986 45993174 ~ 45997710 (+) False AMCG00009782
TU73931 lncRNA downstream 79986 45993174 ~ 45997710 (+) False AMCG00009782
TU73940 lncRNA downstream 105146 46018334 ~ 46022184 (+) False AMCG00009781
TU73945 lncRNA downstream 115507 46028695 ~ 46028969 (+) True G59142
AMCG00009772 mRNA upstream 25872 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009762 mRNA upstream 244401 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009765 mRNA upstream 248650 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009764 mRNA upstream 257346 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009763 mRNA upstream 275509 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009780 mRNA downstream 6243 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009782 mRNA downstream 67901 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009781 mRNA downstream 86854 46000042 ~ 46021930 (+) True AMCG00009781
AMCG00009784 mRNA downstream 192212 46105400 ~ 46109996 (+) True AMCG00009784
AMCG00009786 mRNA downstream 205334 46118522 ~ 46128347 (+) True AMCG00009786
TU73851 other upstream 149772 45754586 ~ 45755115 (+) True G59084
TU73611 other upstream 333252 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 395783 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 847013 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1252920 44632750 ~ 44651967 (+) True G58600

Expression Profile