RNA id: AMCG00009780


Basic Information

Item Value
RNA id AMCG00009780
length 747
RNA type mRNA
GC content 0.70
exon number 4
gene id AMCG00009780
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45919431 ~ 45921344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAATGCCAGCTCCTCGGCTGGTACCCGCACAAGgtCCTCACCCCTTCCCTCCTGCCCACCCAGCCCCGCCCCAGTCGCACCCCAGCCCCTCGGCCCTCCCCCTCTCTGGGCAGGCGACCCTGGGGTGTGCCCGCCGGAGCAGGGGGTGGCAATGGAAGGGGGCCAGGGGACCCCCGACAGCCCCAACCGGGCTGTGGAGTACCTGCTGGAGCTCAACAACATCATCGAGAGCCAGCAGAAGCTGCTGGAGACACAGCGGCGGCGCATCGAGGAGCTGGAGGTCCAGCTGGAGCGGCtcaaccaggagaacaaggaccTGCGTCTGGACCGGCTGCAGCAACACCCCCTGCCCCTGCCAGTGCCCCTTGCCCTGCCGCACCGGCCCGAGGCGGCCAGCAACAGCCAGCCCCCGCCCCAGGCTCCGCCCCCGGCCCCGCCACGGCCCGACCACCGCCGCCCCCACGCCCGGCTGACCCGTGGGCTGTCCTGCGGCTCCTCGCCTGcgctggagagggagaggagcgGAGTGGGAGCGGTGGAGCGGCCGGACCGAGGAGGCGGAgtggtggagagggagagagagcggctGGAGAGGGCCGACAGCTCCAGCACCAGCCCGGCCACCACCCTGCAGAGACAAGTGAGTGACCTCTTAATGCccactctgtgtctgtgtcctcaGAGAGAGTGCCCTGTTACTGCCCGCTCTGTGTCTGTGACCTCAGAAGTGAGTGTCCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73912 lncRNA upstream 44999 45874123 ~ 45874432 (+) True G59128
TU73858 lncRNA upstream 156293 45759675 ~ 45763138 (+) True G59091
TU73854 lncRNA upstream 161162 45757110 ~ 45758269 (+) True G59087
TU73853 lncRNA upstream 162661 45756252 ~ 45756770 (+) True G59086
TU73852 lncRNA upstream 163475 45755589 ~ 45755956 (+) True G59085
TU73930 lncRNA downstream 23288 45944632 ~ 45997710 (+) False AMCG00009782
TU73927 lncRNA downstream 71830 45993174 ~ 45997710 (+) False AMCG00009782
TU73931 lncRNA downstream 71830 45993174 ~ 45997710 (+) False AMCG00009782
TU73940 lncRNA downstream 96990 46018334 ~ 46022184 (+) False AMCG00009781
TU73945 lncRNA downstream 107351 46028695 ~ 46028969 (+) True G59142
AMCG00009778 mRNA upstream 6243 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009772 mRNA upstream 40416 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009762 mRNA upstream 258945 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009765 mRNA upstream 263194 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009764 mRNA upstream 271890 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009782 mRNA downstream 59745 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009781 mRNA downstream 78698 46000042 ~ 46021930 (+) True AMCG00009781
AMCG00009784 mRNA downstream 184056 46105400 ~ 46109996 (+) True AMCG00009784
AMCG00009786 mRNA downstream 197178 46118522 ~ 46128347 (+) True AMCG00009786
AMCG00009785 mRNA downstream 283764 46205108 ~ 46217730 (+) True AMCG00009785
TU73851 other upstream 164316 45754586 ~ 45755115 (+) True G59084
TU73611 other upstream 347796 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 410327 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 861557 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1267464 44632750 ~ 44651967 (+) True G58600

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU93259 False 6206 TUCP 0.43 4 NC_056706.1 11323904 ~ 11345858 (-)