RNA id: AMCG00009781


Basic Information

Item Value
RNA id AMCG00009781
length 8091
RNA type mRNA
GC content 0.61
exon number 23
gene id AMCG00009781
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 46000042 ~ 46022184 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagaggagaggaggtgTGAGTCCGCCAGGGGGGGTCTGCGGCCTGGGCAGTACCGACAACACGACCCGCCTCGACAACCGGCGGACGACGGGAtagtaacacaacaaaaaccaCACACCCGCACTGCGCACAGCGGGGTCGATTTGTAACCGGGCGGGTCGCGGTGCGCTGGGATGGGCTGAAAAGCGAAGGCCGCAGCGGCTCCTCTCGTCATCCTGGACTCCCGTGGCTCGTAAACAAAAGGCCTTCTTGCTGCACCGGCGGCCCGAGCTGGCGACAGGGCCCGCGTCACAGAGGCATAGGGGACACTCACACGCACTGCACACCCGGGCTGCTGCAGCGGGGTCTGGGATCAGGCGTATTAACCGCGGGGGGCAGTAAGAGGAAGAGCGCCCCGTCCCCACGGTGCCGGTCCCTGCATCGGACACTCTCACCGGGGCAGTGTTAGCTCGGTACTGGCCCACAGACAGGCCTGACGGACGGACCAGACGAGCCCTCATCCCCGGGACTTAAACCATAAACACACCCAGTCGTGGTGTTGTTTCCGAGTGGGGAAGGAGTTATTTTTAGTGAAAAGTGACTTTttgaacacacacagcattaAACGCCATCACTCATTATTACTACTACCACGATTGGTATTATTAGCGCAACTGTTCGTATTGATATTTGCCAGGACGGACACAGAGCCGGCCGGCCGCCCCACAGTGACCCGGCCTGAGGAGCCTTTGTTCTCCGCTGGCCCCGTGTCTCCAGTGGACTGCAGAGCGGCCTGTCCTCGCCGAGCCGCGCAGACAGACATGGAGACGGACGAGTTCGTGCCGCCGCCGGAGTGCCCGGTGTTCGAGCCCAGTTGGGAGGAGTTCGCCGACCCGCTGGGATACATCGCCAAGATCCGGCCCATCGCTGAGAAGTCCGGCATCTGCAAGATCCGCCCACCGCTGgactgGCAGCCCCCATTTGCTGTGGAGGTGGATAATTTCCGCTTCACCCCCCGCATCCAGAGACTGAACGAGTTGGAgCGGCTGGGTTACCCTCCCGGCAAGAACATCGGCTCCCTGCTGCGCTCCCACTACGACCGGATCGTCTACCCCTTCGAGATGTTCCACTCTGGGGCCAGCATTATGGTATGCCCCGCATCCCCATCCCCGTGCGTCTGCCTGGTCCCCGTCCCCGTCCCAGTGCGTCTGACCGGTCACCGTCCTAGTCCCCATCCCCGTGTGTCTGCCCGGTCCCGGTCCCCGTTCCAGTGCGTCCCTCTTGCGTTGTCTCATCTCCTGGCCTGTCTGTCCCGTGTCTCTCCTCAGTGCCGCCCCCGGCAGCCCTACGACAGTGAGGAGGTGGATAAGGAGTACAAGCCTCACTCCATCCCCCTTCGCCAGTCAGTGCAGCCCCCCAAGACCAGCAGCTACGGGCGCCGTGCCAACCGCCTGCAGCCTGATCCCGAGCCCACAGAGGAGGATATCGAGAAGAACCCAGAGCTGAAGAAGTTGCAGATCTACGGAGCCGGACCCAAGATGATGGGCCTGGGCCTGGTGCCCCGAGACAAGGGTCCGCGCAAGAAAggtactgacacacacacagacaaggccTGGTTCCCCCGAGACACATGCCCATGCAAGAAAGacGAGCTGCCGCAGACGGTGATCGTGCGGGACACTGCGGTGCtggtgaaggaggaggagggcgaggTGGGGGAGGGAGCCGCAGTGCCGCCTCCCGGGCCggtgaaggaggaggagccgCCGCAGGACGAGCCGTGCACCAAGATGACCATGCGGCTGCGGCGCAACCAGAGCAACACGCAGTTTGTGAGTgcgcgagggagggaggggaggggaggcgTCGTCCCGCAGAGAGACGATGACGCCTTGTGGTTACGTGCTGCTGGTATAAAGCGCCCTCCCCCTCAGGTGGACTCGTTCGTGTGCCGGATGTGTGGCCGGGGCGACGAGGACGAGAAACTGCTGTTGTGCGATGGCTGCGATGACAATTACCACACCTTCTGCCTGCTGCCCCCCTTGGCGGACGCGCCCAAGGGCAACTGGCGATGCCCCAAATGTGTGGCGGAGGTGAGCACGGAGCAAGAGTGCAAGCGCCCCCCAGAGGCGTTTGGCTTCGAGCAGGCCACGCGTGAGTACACGCTGCAGAGCTTCGGGGAGATGGCCGACACCTTCAAGTCAGACTATTTCAACATGCCTGTCCATATGGTGCCCACAGAGCTGGTGGAGCGCGAGTTCTGGCGGCTGGTCAGCAGCATCGAGGAGGACGTGACGGTGGAGTACGGAGCCGACATCCACTCCAAAGAGTTTGGCAGTGGCTTCCCGGTCAACAATGGCAAGAGGCAGCTCACCCCCgaggaggagGAGTATGCGCGCAGCGGCTGGAACCTGAACGTGATGCCGGTGCTGGAGCAGTCGGTGCTGTGCCACATCAACGCCGACATCTCGGGCATGAAGGTGCCCTGGCTGTACGTGGGCATGGTCTTCTCTGCATTCTGCTGGCACATCGAGGACCACTGGAGCTACTCCATAAACTACCTGCACTGgGGGGAGCCCAAGACGTGGTATGGGGTTCCCTCAGTGGCGGCGGAGCGGCTGGAGGAGGTGATGAAGCGACTGACCCCCGAGCTTGGCTTCAACCAGGGCTACAACTTCGCAGAGGCCGTCAACTTCTGCACTGCAGACTGGctCCCCGCAGGGCGCTCCTGCATTGAGCACTACAGGCGGCTTCGCAGGTACTGCGTCTTCTCCCACGAGGAGCTCACCTGCAAGATGGCCGCCTGCCCCGAGAAGCTGGACCTCAACCTGGCGGCCGCCACTCACAGGGAGATGTTCAGCATCGTCCAGGAGGAGAGGAAGCTGAGGAAGAGCCTGCtggagagggGCATCACGGAGGCGGAGCGTGAGGCGTTCGAGTTGCTCCCGGACGACGAGCGCCAGTGCGACAAGTGCAAGACGACCTGCTTCCTGTCGGCGCTGGCCTGTTCCCAGTGTCCCGAGAGGCTGGTCTGCCTGTACCACACGCAGGACCTGTGCGCCTGCCCCTCCGACCGACACTACCTCAGgTACAGGTACACACTGGACGAGCTGCTAGCGATGCTGCACCGGCTCAAGGTTCGAGCAGAGTCCTTCGATTCCTGGGCCAACAGAGTGAAAGAGGTGCTGGAACAGGAGCAGAGCCCCAAGAgagAACCTGCCCTGCGTCGTCAGCCAGCTGGGGCAGGTCAAGGTGAGCGCTTGTCCTATTACACTGTGACGCTGTGGCACCGTGACAGTCCTGTGACGCTGTATTGTGCGATTCTGCGCTGTCCCACTGTCCTGCTGGAGGAGGTGACGCAGTTCCAGCACCGGGCCCAGGCGGTACTGAAGGGGGCGGAGCTGAGCCCGGCCCAGCCCGAGGAGCTGGAGGCGCTGCTGGAGCAGGGTGCTGGGCTGGCGGCCGAGGCCCCGGAGTGCGCGCTGCTGCGGGGGCTGCAGGAGCAGGGCCGCTGGCTGGGCGAGGTGCGGCGCACGCTGGGCGCGGGGGGCCGCGGCGTCACGCTGGGGGTCCTGCGCGGGCTGATGGAGGCCGGCTGCAACGTGCCGCAGAGCGACGCTGTGGAGACCGCCATGGCCgagctgcaggagctgctgaCCATCGCCGAGCGCTGGGAGGAGAAGGCCCAGATCTGCCTGGAGGACAGGCAGAAGCACCCCCTGTCCACTCTGGAGGCCATAGTCAGCGAGGCACAGCTCATCCCCGTGCAGCTGCCCAACATCCTGGCGCTGCAGGGCAGCCTGGCGCGGGCGCGGGCCTGGGTCACCGACCTGGAGGAAATTCAGGTCAGTCGGCAGGACCCGGCGGTGGGTCTGGTGcgtcggtcgAATGGGGAGCACTACCCCTGCCTGGACGACCTGGAGGGGCTGGTGGCCGTGGGGCGGGACCTGCCGGTCAGCATGGAGGAGCTGCGGCAGCTGGAGCTGCAGGTGACAAGCGCCCACTCCTGGAGGGATAAGGCCGCCAAGACCTTCCTCAAGAAGAACAGCACCTACGGCCTGCTGGAGGTGCTGTGTCCATGTGTGGAGGTGGCCGGGAAGGCAGCGGGGGGGGCCCGGGCGGACCGTGGCCGGCGCCGGGAGAGAGAAGGGCGGCTTTACCGCTCCGACACCGACAGCCTGGGGCTCTCCGCTCAGGACCTGCGCGACCCGGGAGCCATTGTGAGTGAACGCTGCGTCTGTGCACATCCGGAAGGGGAGAAGCGAGAGAAGGAGGCGATGCGGCGGCTGCAGGAGGCCAACCTAGCCAAGCCGGGGccggaggaggggagggaccgGGAGGAGGGCTGGGAGAGGAGgctggagcagcagcaggaggagcagcaggaggagggagagaaagggaggaggcGGCAGgaagatggaggaggaggaggaggaggaggagagaccGAGGGTGGCGCAGGAGAGGTCGAGGGCGCACAGATGGCACATGTGGACGGCGCCACCCCGCCCTCCCCCTCCTcgcagtgtgtgtgcgtgtgtgggagCCCCGCCCTGCCCCCGCGGACCCCCCAAGCGCGCTGTGACTTGTGCAAGGACTGGTTCCACGGGGGCTGCGTGCCCTTCCCCAGCCTGCTGCCCCCCCCCGGCACAGGCAACGCCGGCAGCCCCCCGGACTCGCGCCCGCCCTGCTGGTGGGACTGGGACTCGCGCTTCCTGTGCCCCCTGTGCCAGCGCAGCCGGCGGCCGCGGCTCGAGGTCATCCTGGCGCTGCTGGTGGCGCTGCAGCGGCTGCCCGTACGGCTGCCCGAGGGGGAGGCGCTGCAGTGCCTGACGGAGCGCGCCATCAAGTGGCAGGACCGGGCACGGCAGGCGCTGGCCTCCCCCGAGCTGCGGGGGGCGCTGGACCGTCTGCAGGATCTGCGGCGGCGCCGGGGCCCGGGGGGGCGAAGCGCCAAGACAGAGGGAGAGCAGAGGGGGGAGGAGAAGGacaaggaggaagaggaggaggaggattcGGTCATTGTGCTGTCGGACTCCGAGGGAGGCGGCGGCGCGGGGGGTGTTATCGACCTCACACAGGACAGCCCCCCCAAGGGCCGCGGCCCAAGCCGGGAGGAGACGCTGGGCAAGACTGCCTGTGAGAACGGACACAGCAGGACAACGCCCCCCCTTTCCACAGCTTCAGgagTGGAGCGCCTGCAGGAGGAGCTGGCCGGGCTTGGGGGTTCAGCCGCACCGGTGCTTAGCCTGTCCGAGGCGGCGCGGGCacagctggaggagctgcagctGGAGGGGGACCTGCTGGAGGTGTCTCTGGACCAGGCCGCCACCATCCACCGCTTGCTGCAGGCCGCCAGCCCCCCCGATACGCGCCGACTGCAGCAGCTTGTACAGGTGGGCCTGGGGAGGGGGGGCCTGTGTGATGTCGGGAGCCGTGTCGGGGAGGAACCCTCACCGCTCACCTGCGCCTCCTCCCCACAGACGCCACTGTTTTCAAAAACACTGAGACGCATCAGTCTGTAAACCAGCAGACGGTAAAATCAACCTCAATCGGCCCGTcgataaatataaaatcatctTCGAATGCACAGAtcagtctgcatgtgaaaacaggCACAGTCTTTATTCTGCTGTTCCTCTAAACTCCTCCAGTTCCTCTAAAGTCCTCCACACAAACCAGGCTTCACATACTCATTCGTCCTGATACCCTTCAGGCTGCTTGTGCTTTGTGCACGGCTGGGATCGATAGTTATTGAGTTATGATCGATTGAAACCCCAAAATTGCACAGATTTCAATGGTGGAACGGATTCTCGTGCGCACGGTCCAAGCTGAAggtcagcagccaatcagcactGGTTATTACGGCCCAATCGGCGGTCAGACTCCGCCTCCCTGTCTCTGCTGCTCTCTCCACGTGTCCGGGTTGTTCCGGGATTcccatacaataaaatactgtattatactaataCCTATAtcacttctactactaataataattacaccACATTAAATACGTGAATATGGGGCTTATAACCAATATATTATTCCACATGATTCACTACTACAACAACCTGTTTACCTTAATTCCCTGTAACGTGTTCTATATTATATGTAGTAACTGGTGATATACTATAGAACACGGctgtatactgtagtatcttgTACTTACTACAGTACTGCATGTACACTGAGACGTACTGCTTACTGCACTCAAACATACTGTGAGATGCACACAGTTTCTCCAGGACCTGGAGCGTGCCGGTCACTGTGGTTATTGCTGCCAGTCTGTGTAATCATGAGGGATGATAAATGCGTGACCGCGCGCGTCCGGCTCGGTGCAGGTCTGTCATCTTTGCCGAGAGATCGGCCGGTGGGGTTTGCCGTGTTGAGATGCATCTTGGACTACAGGTTCCgtgtatttattcatctttGCCATTTGTGTCAGTTCTGTAATTTGGTTGAAAAGGCGATTTTGATACTGAGGCTGACCCTCGAAATGAACAAGAAACGTCTTCATCTGCACCTTCACCCCTCATGTACATGCTCCTGATAAACTTCGCTCTTCCTGCCGCTGTCAGAACTGTGAACAGTGTGCCCAATTAAAACGCTACAGTACTGAACAAAGTGCTTAAAGTTATCGGCCtcagaagcagtaaaatgttcagAACATCCCCACCCAACTCTTTTACAAGATCATGTAGCGAGCACTTCGACTGCGCCATCTCCAATCTTCTGTACGAGACGGGTTGCATTAACCAGTGAAAAGCTTTGTGCCTGGGTAAAACTCACAGCAGAGCTCTGCTGCTggtaaaacgtttttttttttttacaattctaaAGTGTGGGTGGAAAATCGTCCCTGGATTCCTCTAGCGCCCGGAAACACATGGAGAACATGTCCATAatcaatctctccctctctcagatcGAGGCGCAGGAGCAGCGCAGTGCGGGCCGGGGGGGGCGAGGGAAGGACGCCCGCAGGAAGAGGAAGAGCGAGAGAGGAGGGAGCGGAGGGGGAGGGCTGGCACTGTCGCCCGACGCATCAGAGTCCAAGAAAACTCGCCCCCAGCCCCCTCACCCTCCCCCCTCCCAAACACAGCCTGTGGAGATCTTGTGATGAAGGGGAGGGTGCAGTGCTGGTGGCTCTGGAGACCAGAGACCtgggaagaggagagggagggggagggacgGACGGAGAAGTACAGGGACTAAGACACAGACGAGCCTTcagcctccctccccctccGTCGCCCCGAGGACTTGCAGCCCCGAGGGGCTGAGCGACCGCCTGCTGAGACGGACGGACGATGGATGGACGTCTGGGAGAATGACGCTCGaaccctcctcctctctccctctggcactccatgttttttattttttgtatctcttAACCTCCTGCTCATCccttgctccctccctccctctcctccctgcgAGAGCTGGAGATGTATTGTGTCGCTGACTGGCCCTGCAGTGTCCAGCAGGAGGGCTTGGTGTTACTCTGTACAGGGAGTGTAcagcacagactgacacacacactcacacacacacactcacacacacacactcacccctCACTTGACTGAtgctcacacactgacactcacacgcTCCACCGGGCCGCACTCTGGGACAGGCGTGTTGCGTGTGGCCATGATGCGCAGCAGACTCCCGTGTTGATGCAGTATTCCCGTGTCTGTTGATGTTGTACATAGTTCACGGGTCAGTGAGCAGCGCAGGCGGCTCGAGGGCCCCACGCTTGCCGAAGCGGCGCAGTGCAGTATTTGGTGCTACTTACTCCTCTAacaggtctccctctccctcacaaAGACTCGACTCTCGTTCCTCTTCGGCTCCAGATCATTGACTTTATTATTTCCTGTTCTGGTTTCTGATGACCGTTGacttatattattgttgttattattattattattattattattgttgttcttggtATTGTTATTACAGACGCACAGCTCTCTGGGGGGTTTGTGTTCAGACTTTTCAGTTCAATGTcgccttttgtttttattttattttttatttcctagttttattttttcttgttagaAATAAAGGTTCAGAATTGTTTTAGCA

Function

GO:

id name namespace
GO:0043524 negative regulation of neuron apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73930 lncRNA upstream 2332 45944632 ~ 45997710 (+) False AMCG00009782
TU73927 lncRNA upstream 2332 45993174 ~ 45997710 (+) False AMCG00009782
TU73931 lncRNA upstream 2332 45993174 ~ 45997710 (+) False AMCG00009782
TU73912 lncRNA upstream 125610 45874123 ~ 45874432 (+) True G59128
TU73858 lncRNA upstream 236904 45759675 ~ 45763138 (+) True G59091
TU73945 lncRNA downstream 6765 46028695 ~ 46028969 (+) True G59142
TU73955 lncRNA downstream 43498 46065428 ~ 46133506 (+) True G59152
TU73959 lncRNA downstream 82206 46104136 ~ 46128356 (+) False AMCG00009786
TU73960 lncRNA downstream 90290 46112220 ~ 46112856 (+) True G59156
TU73975 lncRNA downstream 147831 46169761 ~ 46187549 (+) True G59169
AMCG00009782 mRNA upstream 6754 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009780 mRNA upstream 78698 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009778 mRNA upstream 86854 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009772 mRNA upstream 121027 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009762 mRNA upstream 339556 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009784 mRNA downstream 83470 46105400 ~ 46109996 (+) True AMCG00009784
AMCG00009786 mRNA downstream 96592 46118522 ~ 46128347 (+) True AMCG00009786
AMCG00009785 mRNA downstream 183178 46205108 ~ 46217730 (+) True AMCG00009785
TU73851 other upstream 244927 45754586 ~ 45755115 (+) True G59084
TU73611 other upstream 428407 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 490938 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 942168 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1348075 44632750 ~ 44651967 (+) True G58600

Expression Profile