RNA id: TU73931


Basic Information

Item Value
RNA id TU73931
length 3328
lncRNA type sense_over
GC content 0.51
exon number 2
gene id AMCG00009782
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45944632 ~ 45997710 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGGCATGGCCGGAGTCGGAGGGGGCCGGGGCAGCTGGGCCGGGCGGGGGGTCGGAGGCGGCGCAGTCTGCTCAGGCTCTGCTACTTTCACATCCGCTTCCCTCAGGTGTAGAGGCCTGCTgcagctccctccctctcactgacacgcacacacacactgacacactcacactgacacacacactaactgacacacacactcacacactgacactctgacacactgacacactctcacacactgagacacccacacactgacacactcactcacactgacacactcactaaGTCACTCACAGTGACACACATGCACTTGGCAGGGGGAGCTCCagcagggagggggagggatggTCAGAAGTGTGAGCTGCACAGAGACCTGGGGGGGGCTGTATACAGTATAGCGCCTCAGCACACTGAAGCGATGGGCAACGCACTGAGAGGGCAGAGCGGTgctgtgcattgtgggaaacCAGGGAACACAGCAGGGAACCAGGGCAGAACCGGCTGCGTCCCAGGCCCCCTCACCGAGCCCGGCCTTCACACGGCTCCCTGTGCTCGTGGCTGCAGCGCAGTGCCGAGACCCGGGGCAGGACGTCCCCCCGGGGGCCAGGAGCCATGAGACACGGACAGGGAGGCGGTGCGGCCCGGTGTTACACCCTCATCACTCTGCCCGTCAGGGGggaagggatttttttttttgcgaagACGCCAAACAAACCAGTCAAGACATTGTGCCAAATCTGTGGCTCCCAGGCCAGGactgagagagagcaagagagagagcaagcccCTGCATCTCCAAGAGAGAGATGAAtttgagaggagaggagaggtgaagagagaggagatgtttttttcatggaCTTCAAAACAAgaacgagggagagagagggtgaaggGAATAGAgaaacccctctctctctctgtctctcggtctttgtctctctgtctgtctctctctcttgcacttCGTTCACATGATGACTCCGCTGAAGAAGCAGCCCTGTAAGATTTCTGCACTactgaaagaagaaagaaaaaaaagaaacagacttAAAGGACAGCAGGgctgaaagggagagagagagagagagagagagagagcggccTGTTTGCgtcattgtgtttgttgtctttgCGGGTGTCCAGCACAGACAGCCCCTCGGGGACACTGCACACCGCTCACTGCACACCGGAAGGCCAACAACTACATGTTAAAGGTTAAGggttgtgtgagtgagtgagaggctgaaaagagcaATGCAAGATGGACAGAGaggacagatggacagagagaccAATGGACAGAGTGCAAGATGGACAGAGAGAAATGCATGGACAGAGTGGACAGGCTCACCACAAAGATGACAATCACACACCGACTCGGTGTCTGAATAACCGACAATCAGGAACAGGGCCCAGGTGTGCAGATGTAGACTCCACGGACTTTAACCGcccaacagacacacacacacacactcatatagaCACAGtcacgcactcactcacacacacacacacacacacactcacatagaCACAgtcacgcactcacacacacacacacacagacacagtcacgcactcactcacacatagacacagtcacgcaatcactcacacacacacacacacacacacacttacatagaCACAGtcacgcactcactcacacacacacacacacactcacatagaCACAgtcacgcactcacacacacacactcacatagaCACAgtcacgcactcacacacacacacacactcacgtagacacagacacagtcacgcactcacacacacacactcacatagaCACAgtcacgcactcacacacacacacactcacatagaCACAgtcacgcactcacacacacacacacacacacacaggccctgtaGGGAGCGCCACAGGGTGTCACAGCTGCAGGGGTTTGTGTGGCAGGCGTTACACTGCCCCCTGGTGGCACAGTGGGACTAACAGAGACAGACtccatacagacagacagacggacagagacgCACTCCAGCTGTTCAGAGACGGGCCAGCAGGCGGGGCATTGATATGCATTTGTTACAGAGTTTTTTAATGACAATAGTGAAGACTGTGTGGCTGTCCTGCTGCTCTCGCAGTGTCACTGCTGCTGACGCTCTCCGTCCTCTGGGCGCTGGCCGCgccgtgtctgtgtctgtgtggacagGATGCTCAGCATCGCGGTGCACGGACACTCGATCACTGATTGTAAACGGAGCCGGCCGTGTGTGTGGTTGCCGTGTGAAATCTTTggattattatgatgatgatgacaattatgattattattattattattacgactattattattattattattgttatcattattgttgtaaCTATTATTGTTTCTAGCGATGTAATgtaactgctttatttttcattttgtcttaattctggtgtaaatatatatatataaatatatgtgtgtgtgtgtgtgtagttaatgtagtgtatgtatgtatactagaccgcgcacacacacacgtatatgtTTATATGGTTTTAAAGCTATCTCAGTGAGTGAGATGCTGTTTTGAGAAGTTTTGTGACTTTGCACAGGATTCTGATGTTGGCTGTTGCCTCGGTAGCCTGCCCCTTCATGCTTAGTGGTTGCGTTttcacttttcctttctttctttctttctttctttctttgcgCTGGTCTCCTAGGCGACAGGCAGAtgtgttttatacacacacacacacgtatgtattaatataagaTATGAGCTGCAGTGCATATCCTCATGGTGTGAGGAGACTCCTGAAATAGTGTCCCTCTCTGTATAGTAACACTGTCCTGTCCCTTTgcctcgctctccctctctctctcctgtctgcctctctccctccaaaCCTTCGTATAGCTCATTATATCCTCTCTTCCTTCTCGTAAGCTCTCTGTTCTGTTGATTTCCTTTTCCTTGTTGTGTTTCGTTGTTGTGCGGAGGGGGGGGgactgggagaggagagggagagacaggaggGACTGAAGAAGGAGCAGTGACCTGGACGGAGTGAGGGATGAGCGAAAGACAAGAGAGAAACAAGACAGGAAGGGATGGGGGGGCAGCcgtttcctgtgtgtgtgtgtgtttccatttGAGTCCCTGGTCACGATTCGAACACGTCTTCCCATTGACACCTCCAGCATGAGCCCCCGTCTGTACCTGCGCCGCTGAATGCTGTATAGAcatgaatgtaaatattatatagtATAAATACTGAATATTGACTATGAAATGGACTGTACCATGTCTCTGTTTTttcaggggtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73912 lncRNA upstream 118742 45874123 ~ 45874432 (+) True G59128
TU73858 lncRNA upstream 230036 45759675 ~ 45763138 (+) True G59091
TU73854 lncRNA upstream 234905 45757110 ~ 45758269 (+) True G59087
TU73853 lncRNA upstream 236404 45756252 ~ 45756770 (+) True G59086
TU73852 lncRNA upstream 237218 45755589 ~ 45755956 (+) True G59085
TU73940 lncRNA downstream 20624 46018334 ~ 46022184 (+) False AMCG00009781
TU73945 lncRNA downstream 30985 46028695 ~ 46028969 (+) True G59142
TU73955 lncRNA downstream 67718 46065428 ~ 46133506 (+) True G59152
TU73959 lncRNA downstream 106426 46104136 ~ 46128356 (+) False AMCG00009786
TU73960 lncRNA downstream 114510 46112220 ~ 46112856 (+) True G59156
AMCG00009780 mRNA upstream 71830 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009778 mRNA upstream 79986 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009772 mRNA upstream 114159 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009762 mRNA upstream 332688 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009765 mRNA upstream 336937 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009781 mRNA downstream 2332 46000042 ~ 46021930 (+) True AMCG00009781
AMCG00009784 mRNA downstream 107690 46105400 ~ 46109996 (+) True AMCG00009784
AMCG00009786 mRNA downstream 120812 46118522 ~ 46128347 (+) True AMCG00009786
AMCG00009785 mRNA downstream 207398 46205108 ~ 46217730 (+) True AMCG00009785
TU73851 other upstream 238059 45754586 ~ 45755115 (+) True G59084
TU73611 other upstream 421539 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 484070 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 935300 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1341207 44632750 ~ 44651967 (+) True G58600

Expression Profile