RNA id: TU60784



Basic Information


Item Value
RNA id TU60784
length 709
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G48636
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 222053 ~ 222787 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tattcagatttttttaatagttttttttttagtttttttgtctttttattatttttttacagtagttAATGTgcaattatctttattattggGTCACAGTTAGGAATTCACAAAGTTATTGGCACTttgaacacagaataaacactgGCGATACAGGGTCACAGCGGCTGGAGCTTCAGTGGACGCTACTGCATTGCTTTGAAAAAGCGTTTCTGGATTAATACCTCATGCTGTGAGAGCACACCTAACAATCAAACTTCATTAGTGCTTCTatgtataatatacagtatatatatatagagagagtgaAAAAGACCTGCAGACCCCAGAGCAACAGAGACCTGCACctctgctctttctctctctctcaaactccCCCCCATCCTGCTGCTCCAAGTCAGGtttgctttttctgtttcttttgaatTTGCAAAACAAGTCAAAGGAATCCTAACTGAAAAccatgggagagagagagagggtctcGCTCTCTGTGCCCAAGCAGGACGGGGTAGTAAGACCAGTGAAgaagacaggagaggagagggaagccTGGggctgtggggtggggggggctcaATTAAAACGGACACCTGCCagtgcaaagagagagagagagagaggggggggccGGGGCAGACTGCAGCATCTCCTCTTACGGCTCCGGGGTCGGGATTACAGCGGATATTTAGTTGGGCTCTGGATAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60776 lncRNA upstream 17178 204481 ~ 204901 (+) True G48631
TU60756 lncRNA upstream 124950 94649 ~ 97129 (+) True G48618
TU60786 lncRNA downstream 2478 225265 ~ 225944 (+) True G48637
TU60796 lncRNA downstream 28520 251307 ~ 252482 (+) True G48647
TU60881 lncRNA downstream 34795 257582 ~ 258264 (+) True G48716
TU60884 lncRNA downstream 37487 260274 ~ 263022 (+) True AMCG00008376
TU60887 lncRNA downstream 41233 264020 ~ 264390 (+) True G48720
AMCG00008371 mRNA upstream 3204 214645 ~ 218875 (+) True AMCG00008371
AMCG00008375 mRNA upstream 17684 153189 ~ 204395 (+) True AMCG00008375
AMCG00008367 mRNA upstream 94350 127056 ~ 127729 (+) True AMCG00008367
AMCG00008368 mRNA upstream 110772 97569 ~ 111307 (+) True AMCG00008368
AMCG00008369 mRNA upstream 127518 87838 ~ 94561 (+) True AMCG00008369
AMCG00008372 mRNA downstream 12108 234895 ~ 243054 (+) True AMCG00008372
AMCG00008374 mRNA downstream 30692 253479 ~ 256222 (+) True AMCG00008374
AMCG00008376 mRNA downstream 37537 260324 ~ 261908 (+) False AMCG00008376
AMCG00008373 mRNA downstream 46973 269760 ~ 273986 (+) True AMCG00008373
AMCG00008386 mRNA downstream 85199 307986 ~ 311984 (+) True AMCG00008386
TU60768 other upstream 54581 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 129199 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 327494 550281 ~ 551906 (+) True G48811
TU61033 other downstream 364493 587280 ~ 588446 (+) True G48846
TU61256 other downstream 653767 876554 ~ 879513 (+) True G49013
TU61359 other downstream 743051 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 1100024 1322811 ~ 1324269 (+) True G49208

Expression Profile