RNA id: TU60786



Basic Information


Item Value
RNA id TU60786
length 622
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G48637
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 225265 ~ 225944 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCATCTCCGCGCACAGCCGCCCGCACATGTGCGTGTCTAtgtacacacttacacactcgCTCATAGATCGCTCAGCAGTCTCTCgtttctcctcctccccctccctcgtTACAGTCTTCAGACCCGTTTCTCTCGCTCTACCTCGGTCTCGGGGTCCTTGGCATGatcgcacacacgcacacggacACGCACGGTCACACACGCACATGATTGCACACGCACGTACTCGCACTGCTTTAAGCCGAccctcccccccgccccaaaaataaaataaaataaaaaatatgaacagaaattaaaaacgCCACCCACAGCGCTGCTGgcgaagggggggggggggtcaacCGGCcgaacacacagacagagacccCCCGCCGCACTGCAGACGGACCCCTCTCTCGTCTCAAGATGCCACTACAGTACAGGACAGTgtcctccctcccacgcaggaaaggagaaaagaggagaggcagacagaaccctcctccttctccccctcAAACCGATACAAACACTGTGAgcgagagagggatggggggggtCCCCACACTGAAAGGTGGATgaatccccccccacacacacactcactctaaaccccccccccatccctcctcCGTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60785 lncRNA upstream 2478 222053 ~ 222787 (+) True G48636
TU60784 lncRNA upstream 2478 222079 ~ 222787 (+) False G48636
TU60776 lncRNA upstream 20364 204481 ~ 204901 (+) True G48631
TU60756 lncRNA upstream 128136 94649 ~ 97129 (+) True G48618
TU60796 lncRNA downstream 25363 251307 ~ 252482 (+) True G48647
TU60881 lncRNA downstream 31638 257582 ~ 258264 (+) True G48716
TU60884 lncRNA downstream 34330 260274 ~ 263022 (+) True AMCG00008376
TU60887 lncRNA downstream 38076 264020 ~ 264390 (+) True G48720
TU60888 lncRNA downstream 40630 266574 ~ 266881 (+) True G48721
AMCG00008371 mRNA upstream 6390 214645 ~ 218875 (+) True AMCG00008371
AMCG00008375 mRNA upstream 20870 153189 ~ 204395 (+) True AMCG00008375
AMCG00008367 mRNA upstream 97536 127056 ~ 127729 (+) True AMCG00008367
AMCG00008368 mRNA upstream 113958 97569 ~ 111307 (+) True AMCG00008368
AMCG00008369 mRNA upstream 130704 87838 ~ 94561 (+) True AMCG00008369
AMCG00008372 mRNA downstream 8951 234895 ~ 243054 (+) True AMCG00008372
AMCG00008374 mRNA downstream 27535 253479 ~ 256222 (+) True AMCG00008374
AMCG00008376 mRNA downstream 34380 260324 ~ 261908 (+) False AMCG00008376
AMCG00008373 mRNA downstream 43816 269760 ~ 273986 (+) True AMCG00008373
AMCG00008386 mRNA downstream 82042 307986 ~ 311984 (+) True AMCG00008386
TU60768 other upstream 57767 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 132385 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 324337 550281 ~ 551906 (+) True G48811
TU61033 other downstream 361336 587280 ~ 588446 (+) True G48846
TU61256 other downstream 650610 876554 ~ 879513 (+) True G49013
TU61359 other downstream 739894 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 1096867 1322811 ~ 1324269 (+) True G49208

Expression Profile