RNA id: TU60887


Basic Information

Item Value
RNA id TU60887
length 371
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G48720
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 264020 ~ 264390 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctggctcagttttgtcctctttcttgtggattgggatgacatttgctgtcttcaggtcagttggcacatcccctgttctaagtgtcatttggaatatttgacttagcgacctatacataatttccctcatttcttcgtttctctttcacacacacacacacacacacgcacacacacactctctgcctctcacatacatacaaacatacacacagactctCACTCACACAACACATTGATGTTTACACTCACAACACACAGACGATACACAGtcacgcacacgcgcacacatgTTGTGCAGGGGAGGAGCAGGCCACGGGCCACAGTGATGTTTCTGTGTAATGCAGTCCTGTTGTAAATACCTGATTCA

Function

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0048037 obsolete cofactor binding molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60884 lncRNA upstream 998 260274 ~ 263022 (+) True AMCG00008376
TU60881 lncRNA upstream 5756 257582 ~ 258264 (+) True G48716
TU60796 lncRNA upstream 11538 251307 ~ 252482 (+) True G48647
TU60786 lncRNA upstream 38076 225265 ~ 225944 (+) True G48637
TU60785 lncRNA upstream 41233 222053 ~ 222787 (+) True G48636
TU60888 lncRNA downstream 2184 266574 ~ 266881 (+) True G48721
TU60975 lncRNA downstream 163491 427881 ~ 488584 (+) True G48796
TU60985 lncRNA downstream 174593 438983 ~ 444637 (+) True G48803
TU60988 lncRNA downstream 192259 456649 ~ 458299 (+) True G48806
TU60996 lncRNA downstream 209355 473745 ~ 551906 (+) False G48811
AMCG00008376 mRNA upstream 2112 260324 ~ 261908 (+) False AMCG00008376
AMCG00008374 mRNA upstream 7798 253479 ~ 256222 (+) True AMCG00008374
AMCG00008372 mRNA upstream 20966 234895 ~ 243054 (+) True AMCG00008372
AMCG00008371 mRNA upstream 45145 214645 ~ 218875 (+) True AMCG00008371
AMCG00008375 mRNA upstream 59625 153189 ~ 204395 (+) True AMCG00008375
AMCG00008373 mRNA downstream 5370 269760 ~ 273986 (+) True AMCG00008373
AMCG00008386 mRNA downstream 43596 307986 ~ 311984 (+) True AMCG00008386
AMCG00008384 mRNA downstream 63233 327623 ~ 340268 (+) True AMCG00008384
AMCG00008389 mRNA downstream 77372 341762 ~ 344446 (+) True AMCG00008389
AMCG00008385 mRNA downstream 88176 352566 ~ 358341 (+) True AMCG00008385
TU60768 other upstream 96522 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 171140 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 285891 550281 ~ 551906 (+) True G48811
TU61033 other downstream 322890 587280 ~ 588446 (+) True G48846
TU61256 other downstream 612164 876554 ~ 879513 (+) True G49013
TU61359 other downstream 701448 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 1058421 1322811 ~ 1324269 (+) True G49208

Expression Profile