RNA id: TU60988


Basic Information

Item Value
RNA id TU60988
length 1631
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G48806
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 456649 ~ 458299 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTACACTGCACTTTATGGTTttagcactgtgtgtgtgtgtgtgtttcaggccaccattaacagaaaatacacacaaaagaacacaaaacacaagttaaaagaaaaaataaaatgtaatcgtTCAGTCCTTTATTCATGTCGTATCGCTGCATATTTCATTCAGCATGGAATTatacatctttattattataatagtaataattattgttattgttattatttattactaccATTATTATCACAGGTATTGCATTACTATTTTTGATGttgtaaatgtacaaatattaggtcatatcaaattaaaagtttaataataatatatattttttaaatccttcacAACCCTATTAGTATGCAGTACAGTAGCTCTTGTCCAGAACTGAATTTGGAGTGTTGGACCGCACATCAAAGTTCCATCTCCATAGAAACCTCAGCCCCGCCCTCTGCGCTGCCCCATCGCTAACACACTTTCTACATGCTGCTGTAAAGGCCCCCccaccatacacacacagtaacataaTGCTCTACTCTACACagctgcactacactacactcgTGTCAGACCCacattcattcacacacacgTGTCACTGAAGTCACTCTCGGTTTCTCTCCCACTTGCAACCACCCAGGCACCCcctccaccctctctctctctctctctcacacacacacacacagggcccAGACTGCAGCCAGCGCTGTGTtactacagtatagtatagtatagggcccagactagagcagcgctgtggggactaatTTGCTAATCAAATCCCCCAGtgcgctcacacacacacacacacatcacagtaATCTCACTCAGTAGGGTTTCCAGTCGAACCCTCAGCCGATACTCTGCTCCCCCGACACAGAACACAGAGGAAGAGATGAGGGGCTCAGGGTTCGAAACAGTGCGAGAAAGggacagagacggagagatatatatgtgtaaaagtgtgtatgtatatgtatgtgtgtatttatgtaggCATGTGTACACATGTGTGCTTGTATGATTTaagtatgcatatatatatatatatgcatgtatgtaggTTTACATGTACTTTCTGTCCACATATTTTCACTTCCTGCTTCGTGGTGTTCAGGAACGGCCACAGTGTGTTCAGGGTAGACATCTCTCTGGTTTCCGCCCCATAAAGCATAAATACCCCGGCCTGATCACCCCCCGCATCCGTCATCTGCCCCACTTCGGCAGCAGCTCCCTGTGGACCCAGCACCAGACCGCCATGCCCTCAGCCAAGTGAGTTCAGCCAAACCTCTTTACACTGCAGCCTCACACCACAGCGCAGTGCAGTGATGGTGATTGTTGCTGTTGATGTGTGTGTCATTGCTCTGGAAACACTACAGTCTGCCATGCCAGTACAGCACcactggaattggaatttgggagagtgggcgatacagagagagaggagaaagagagagaggaaaggttTTCCTGCATGGTTATACAGCACCATACCTGTACCATACAGTACTATAtgttactgtactgcactatactgtactatactgtccTATCCTGTACCAAGCTGTCCTGTATACATGCCCCTGCTGTAGCTGACCTTGCTGAGCTGTGGCTGTCCAGGGCTCCACACTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60985 lncRNA upstream 12012 438983 ~ 444637 (+) True G48803
TU60888 lncRNA upstream 189768 266574 ~ 266881 (+) True G48721
TU60887 lncRNA upstream 192259 264020 ~ 264390 (+) True G48720
TU60884 lncRNA upstream 193627 260274 ~ 263022 (+) True AMCG00008376
TU60881 lncRNA upstream 198385 257582 ~ 258264 (+) True G48716
TU60996 lncRNA downstream 15446 473745 ~ 551906 (+) False G48811
TU61003 lncRNA downstream 30326 488625 ~ 489866 (+) True G48818
TU61009 lncRNA downstream 59200 517499 ~ 519480 (+) False AMCG00008397
TU61016 lncRNA downstream 94168 552467 ~ 554260 (+) True G48830
TU61127 lncRNA downstream 171585 629884 ~ 632393 (+) True G48915
AMCG00008391 mRNA upstream 29304 425827 ~ 427345 (+) True AMCG00008391
AMCG00008390 mRNA upstream 41717 389608 ~ 414932 (+) True AMCG00008390
AMCG00008385 mRNA upstream 98308 352566 ~ 358341 (+) True AMCG00008385
AMCG00008389 mRNA upstream 112203 341762 ~ 344446 (+) True AMCG00008389
AMCG00008384 mRNA upstream 116381 327623 ~ 340268 (+) True AMCG00008384
AMCG00008396 mRNA downstream 35941 494240 ~ 506457 (+) True AMCG00008396
AMCG00008395 mRNA downstream 48644 506943 ~ 509857 (+) True AMCG00008395
AMCG00008397 mRNA downstream 60959 519258 ~ 525325 (+) True AMCG00008397
AMCG00008402 mRNA downstream 81814 540113 ~ 541044 (+) True AMCG00008402
AMCG00008403 mRNA downstream 150734 609033 ~ 629437 (+) True AMCG00008403
TU60768 other upstream 289151 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 363769 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 91982 550281 ~ 551906 (+) True G48811
TU61033 other downstream 128981 587280 ~ 588446 (+) True G48846
TU61256 other downstream 418255 876554 ~ 879513 (+) True G49013
TU61359 other downstream 507539 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 864512 1322811 ~ 1324269 (+) True G49208

Expression Profile