RNA id: TU60996



Basic Information


Item Value
RNA id TU60996
length 524
lncRNA type read_through
GC content 0.59
exon number 4
gene id G48811
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 473745 ~ 551906 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCAACACGACGTGAATAAACAAACGGCTTGGCCAGTCCAGGAGATCAGGGGCCTCTGGGAGGAGCTCTGACATCACTGGGACTCCTACCccacgcagacagacagacagacagacagggacgTGGGGGACAGTGGGGACAGTGGGGACAGTGGGGACAGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagggtccTCTACGTCTTCTTGGCCGCGCTGTGCCTCTGTGCCGGCTCTCCACTCTTCAGCACACTCAGTCTCTTGTGCATCGTGGCGCTGGCCCTCTGCGTCACTTCCTGCTCGATGTGAGTCCGGATTGCCACCTCCAGGGTCTTCTTCAGCTTGTACTGTTGGACCACCTGGGCTTTCTTCGGGACGATGACTCTCCCTCCTTTCTTCGGGCCcttgtgtttgtgctgctgcGGCGCCTTCTTCCCTCCGGGGCGCTGTGCCTTGAACTTCTGTTTCCCCTGCGCCATCTCGACTTCTCCCCCGCCAATGGAACTGTGGGATACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60988 lncRNA upstream 15446 456649 ~ 458299 (+) True G48806
TU60985 lncRNA upstream 29108 438983 ~ 444637 (+) True G48803
TU60888 lncRNA upstream 206864 266574 ~ 266881 (+) True G48721
TU60887 lncRNA upstream 209355 264020 ~ 264390 (+) True G48720
TU60884 lncRNA upstream 210723 260274 ~ 263022 (+) True AMCG00008376
TU61016 lncRNA downstream 561 552467 ~ 554260 (+) True G48830
TU61127 lncRNA downstream 77978 629884 ~ 632393 (+) True G48915
TU61128 lncRNA downstream 77978 629884 ~ 630313 (+) False G48915
TU61135 lncRNA downstream 88970 640876 ~ 641904 (+) True G48921
TU61136 lncRNA downstream 88970 640876 ~ 691037 (+) False G48921
AMCG00008391 mRNA upstream 46400 425827 ~ 427345 (+) True AMCG00008391
AMCG00008390 mRNA upstream 58813 389608 ~ 414932 (+) True AMCG00008390
AMCG00008385 mRNA upstream 115404 352566 ~ 358341 (+) True AMCG00008385
AMCG00008389 mRNA upstream 129299 341762 ~ 344446 (+) True AMCG00008389
AMCG00008384 mRNA upstream 133477 327623 ~ 340268 (+) True AMCG00008384
AMCG00008403 mRNA downstream 57127 609033 ~ 629437 (+) True AMCG00008403
AMCG00008410 mRNA downstream 157342 709248 ~ 712619 (+) True AMCG00008410
AMCG00008412 mRNA downstream 164189 716095 ~ 719874 (+) True AMCG00008412
AMCG00008411 mRNA downstream 223485 775391 ~ 778431 (+) True AMCG00008411
AMCG00008418 mRNA downstream 233520 785426 ~ 799063 (+) True AMCG00008418
TU60768 other upstream 306247 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 380865 87317 ~ 92880 (+) False AMCG00008369
TU61033 other downstream 35374 587280 ~ 588446 (+) True G48846
TU61256 other downstream 324648 876554 ~ 879513 (+) True G49013
TU61359 other downstream 413932 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 770905 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 1378748 1930654 ~ 1936502 (+) True G49298

Expression Profile