RNA id: TU61003


Basic Information

Item Value
RNA id TU61003
length 1214
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G48818
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 488625 ~ 489866 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgagagtgagagtgtgagtgtgtgcttcACACACAGATCATACAGAATCAATAACCACACCAATAAACACTCTCTCCACGAGTCACTTCAAACTCCCGTCCACTCACTTGTATCGAGTCGTTGGCCATCCTGTCCACCGTGtccggctctctctctctctctctccttctccggTTTCCTGTCCCGTCCGCTTCTGTAGTTCTTCTCCTTTAATGCACAGCAGATCCCTATCAACGTATACCGTTCCCTGCGACTCCGTGCgcctattataattattattagtagtagtagtagtagtagtagttgtaatagcagtagtagtagcagtagtattaCTCCTGAGTCCAAGCCACGGAAAGTTGCGCCTGACCGCGGCTACAGCCCCCGTGTCTCCCCGGGTCTCTGTCGCTGTCCCGCCGCCTGCCACCGACCCGAGCGGCTCCGCGGCGCACAGAGCATCGCCGGCTCCCCGGGCTGAGCTGGGCTTCCCGGGCTGGGCTGCGGCTGCGTGTTCCCCTGCTCTGGAGACAGACCCCTGCAGTCCTCCGGCAAAATAAGGTCCAATAAATGAACGGTGATATAACAGGAATCGCCAAAGCGCCGTTGTGTTCAAAAGAAACTGCCCGTCAAAGTGCGCAGTGGACAGTCTTGTGTCTCGCAGAGGCGCCGAGTGCCAGTCCGTGGTGTAGTAGtgcagctacacacacacaaccattaTAGtgcagctacacacacacaaccattaTAGtgcagctacacacacacaaccgtTATAGtgcagctacacacacacaaccattaTAGtgcagctacacacacacaaccccctgCGCTCCGAGCTTAGCATCACTGTCGAGCCgtgcgcctctctctctctctctctctctctcttacgaCGGGCGGGCAGCACTGATACACATCGCCAGTCCTTTCTTCCCCAAAcgacacaaaaaagaaaaactggggGCTGGTTGGGGGGGTCGGGGGTATCAAACAGCCTATTTCCGTCACAGCCAAAGAGGCATCCCGACCAGCACTGCTCCGGCCCCGGGTTCAATAATAACACGATCTGTCTGTTTACAGGATAATAGAGGAGTATTGAGCGACGGCGGTCCCGCCCAGCGGCCAGCGActcgtgagtgtgtgtgtccgtcCGGCGGTGTGTCCGTCCGGCTGCTGGCCCTCCGCGCACTCGCACAGCGCATGTGACCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60975 lncRNA upstream 41 427881 ~ 488584 (+) True G48796
TU60988 lncRNA upstream 30326 456649 ~ 458299 (+) True G48806
TU60985 lncRNA upstream 43988 438983 ~ 444637 (+) True G48803
TU60888 lncRNA upstream 221744 266574 ~ 266881 (+) True G48721
TU60887 lncRNA upstream 224235 264020 ~ 264390 (+) True G48720
TU61009 lncRNA downstream 27633 517499 ~ 519480 (+) False AMCG00008397
TU61016 lncRNA downstream 62601 552467 ~ 554260 (+) True G48830
TU61127 lncRNA downstream 140018 629884 ~ 632393 (+) True G48915
TU61128 lncRNA downstream 140018 629884 ~ 630313 (+) False G48915
TU61135 lncRNA downstream 151010 640876 ~ 641904 (+) True G48921
AMCG00008391 mRNA upstream 61280 425827 ~ 427345 (+) True AMCG00008391
AMCG00008390 mRNA upstream 73693 389608 ~ 414932 (+) True AMCG00008390
AMCG00008385 mRNA upstream 130284 352566 ~ 358341 (+) True AMCG00008385
AMCG00008389 mRNA upstream 144179 341762 ~ 344446 (+) True AMCG00008389
AMCG00008384 mRNA upstream 148357 327623 ~ 340268 (+) True AMCG00008384
AMCG00008396 mRNA downstream 4374 494240 ~ 506457 (+) True AMCG00008396
AMCG00008395 mRNA downstream 17077 506943 ~ 509857 (+) True AMCG00008395
AMCG00008397 mRNA downstream 29392 519258 ~ 525325 (+) True AMCG00008397
AMCG00008402 mRNA downstream 50247 540113 ~ 541044 (+) True AMCG00008402
AMCG00008403 mRNA downstream 119167 609033 ~ 629437 (+) True AMCG00008403
TU60768 other upstream 321127 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 395745 87317 ~ 92880 (+) False AMCG00008369
TU60995 other downstream 60415 550281 ~ 551906 (+) True G48811
TU61033 other downstream 97414 587280 ~ 588446 (+) True G48846
TU61256 other downstream 386688 876554 ~ 879513 (+) True G49013
TU61359 other downstream 475972 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 832945 1322811 ~ 1324269 (+) True G49208

Expression Profile