RNA id: TU61016


Basic Information

Item Value
RNA id TU61016
length 1794
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G48830
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 552467 ~ 554260 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTGTGTTAAACTTAATGGTCCGCTATAGAACAACGAAAAAAACCAAAACCTTtcttcttaaacaaaaaaaataaatcggtcaggagaaaaaaaacttttaaagtcTAGAAAAATTATTTGTGCCCCTGAGCACAAAATAAACCAGCAAAggaacaaatgaaacaaaataaaactataacaaaAGACCTGAAAacggtaaaaaaaacaaaaaattacaaaaatgttttacgacaataactgaagaaaaaaaactgaataaataaaaaaataaattaaaaaaatttaaataaaaaaagaaaaataaacctcttggggggggggggaaattaaCATAATTGATACTTATACTAACGCACCTGGGCCAGAGTGCCACTGAACAGAAGTGACtggagaggtgtgtgtgtgtgtgtgtgtgtgtcaacaCTGAGGCCCAGTACAGGACATGTTGGTCAGGATCGCTCACAATTATAGGTCTCTGCCTCcctcagagcccggggggtcaCAGTAACTGGACAGGGATTCAGTCATAcccagcacacaacacacagcacgaGACCCCACACGCAtgcactctcactctctcgcacacacaacCTGTCCCTACAGGCGCCGCCCAGCAGACTACCGGACCCAGTCTATCCCTGTACTGGCTGCTCGACCTCCCTTCACCAGAGCCTCCCATGGACACCCACAGCCCCCTGCCAGCACATTGCACTAGCggctgggggggggcagagacCAGGAGGTAAGCAGGGGGTCGGGGGTGCAGAGCACCAGAGCAAGATCACTGGATTTGACTCTCATGACATTTCATTCGTCGACCATCAGTAAATATTCAGACCTCCCTAAAGCAGCGTCTCTGATTGCTCttcaaaaagaaacattaattaaaacgaGTGATAATCTCGCTggactggcacacacacacaactctctCCACAAGTTCATCACTGGATCCTATTTCTGTCCATCTTTCTACCCATTTCAGCCTTTAGTCTGACTGTCCTacaggaaaacagaaatgtttctctcactcactcacacagtgTTGAGTCCGCTATGGCTTGTTTAGTCTTTTGAACCGTCTCCttttcagaatttaaaaatgaaataaaagtgcaCACAGTAAGTCAGCCCTGTGAGGATCGGATGAATgattgaattgtgtttttttgtcctgGTCTCTCCGGCGCCGCAGGCGAGGATCAGCTCACAggcagaagtgtgtgtgtgtgtaggatgGAGGGAGAACAGTGGCTGCAATAAAGtcatcacatacacacactcccTGACAACCCACTCCcgattttaaaataatccccAAAGGATCCCCCTGTATtctgccccctccctctctctcccggaCACACGTGTGCGTCTCACTGTGACCAGGTAGGGTCTCGGATTAAAAGCGAGACCCCTTCtacacactgcagccccccctcccgtgtttgtgtgagtgtgtataaaGCAAGAGTGAAAGAACACATGCAGGACAGTCTGACGACCGCCGAGGGAACACGAGCGTCTCTCTTTAAAGAGTTCTTAATGCGTTCGACAACTTCACACCCGTCATCTAACCATCATCACTGTATTATTCTCAGCATCGTCGTTGTTCTGGCTGAACTCCggcttcagcagcagcagctcataGTGACTGAAGTCCACTGATCAATATCGTTTACTTTTCAAtcgtaaaaaacaaaaacaaaatacaaaataaataaaagaaaaaaagaaaacagaactaCAATAAATAAGAGAAACCGGAGTCGAGAGGAGCGCAGGAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60996 lncRNA upstream 561 473745 ~ 551906 (+) False G48811
TU61009 lncRNA upstream 32987 517499 ~ 519480 (+) False AMCG00008397
TU61003 lncRNA upstream 62601 488625 ~ 489866 (+) True G48818
TU60975 lncRNA upstream 63883 427881 ~ 488584 (+) True G48796
TU60988 lncRNA upstream 94168 456649 ~ 458299 (+) True G48806
TU61127 lncRNA downstream 75624 629884 ~ 632393 (+) True G48915
TU61128 lncRNA downstream 75624 629884 ~ 630313 (+) False G48915
TU61135 lncRNA downstream 86616 640876 ~ 641904 (+) True G48921
TU61136 lncRNA downstream 86616 640876 ~ 691037 (+) False G48921
TU61166 lncRNA downstream 140208 694468 ~ 696113 (+) True G48947
AMCG00008402 mRNA upstream 11423 540113 ~ 541044 (+) True AMCG00008402
AMCG00008397 mRNA upstream 27142 519258 ~ 525325 (+) True AMCG00008397
AMCG00008395 mRNA upstream 42610 506943 ~ 509857 (+) True AMCG00008395
AMCG00008396 mRNA upstream 46010 494240 ~ 506457 (+) True AMCG00008396
AMCG00008391 mRNA upstream 125122 425827 ~ 427345 (+) True AMCG00008391
AMCG00008403 mRNA downstream 54773 609033 ~ 629437 (+) True AMCG00008403
AMCG00008410 mRNA downstream 154988 709248 ~ 712619 (+) True AMCG00008410
AMCG00008412 mRNA downstream 161835 716095 ~ 719874 (+) True AMCG00008412
AMCG00008411 mRNA downstream 221131 775391 ~ 778431 (+) True AMCG00008411
AMCG00008418 mRNA downstream 231166 785426 ~ 799063 (+) True AMCG00008418
TU60995 other upstream 561 550281 ~ 551906 (+) True G48811
TU60768 other upstream 384969 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 459587 87317 ~ 92880 (+) False AMCG00008369
TU61033 other downstream 33020 587280 ~ 588446 (+) True G48846
TU61256 other downstream 322294 876554 ~ 879513 (+) True G49013
TU61359 other downstream 411578 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 768551 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 1376394 1930654 ~ 1936502 (+) True G49298

Expression Profile