RNA id: TU61033



Basic Information


Item Value
RNA id TU61033
length 535
RNA type TUCP
GC content 0.59
exon number 2
gene id G48846
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 587280 ~ 588446 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAAAAAGCCCTGTGTGTCACAGATGTCACAACGCTTACGGCATCCTGCTTCTTGTGTATTTCCGGCTTTGTGTGGACACTGGTGTTCTCAGAAGTGTCACCTGGTGTGACACCCTTGTGCCTCCGGTACGTCAACGCTCTGGGACTAAGGCTGTGTGTCTTGCAGGTGTTGCTGGGGGCGATGAGGGAGAGTATCTGGAGAGACGCCgcattgctgctgctgctgctgctgctggctggGCAGCCCCGCTTGGtccctgCAGTAAAGGTGCTCTGCCTGTGGGGGCAGTATTTCCACCGGGGTCACAATGTATCTGGGGCGTGTCAGTTGCAGGAGggacccctcccccccagctgCATCACCCAACCACTGCAGCTAACGGTGGATGGCCAGACCCTCCCACCACAGAGCCACACCCACCCTGGCATCACAAACTTCACAGTCCCCGCCTCCCAGGCTTCCAGGTTGCTGATTCGCTGCGAGGTCACCTGCGCCACTGCCCATTCCTCCTGTGATGTCATGATGGAGGCTGGCT

Function


GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61016 lncRNA upstream 33020 552467 ~ 554260 (+) True G48830
TU60996 lncRNA upstream 35374 473745 ~ 551906 (+) False G48811
TU61009 lncRNA upstream 67800 517499 ~ 519480 (+) False AMCG00008397
TU61003 lncRNA upstream 97414 488625 ~ 489866 (+) True G48818
TU60975 lncRNA upstream 98696 427881 ~ 488584 (+) True G48796
TU61127 lncRNA downstream 41438 629884 ~ 632393 (+) True G48915
TU61128 lncRNA downstream 41438 629884 ~ 630313 (+) False G48915
TU61135 lncRNA downstream 52430 640876 ~ 641904 (+) True G48921
TU61136 lncRNA downstream 52430 640876 ~ 691037 (+) False G48921
TU61166 lncRNA downstream 106022 694468 ~ 696113 (+) True G48947
AMCG00008402 mRNA upstream 46236 540113 ~ 541044 (+) True AMCG00008402
AMCG00008397 mRNA upstream 61955 519258 ~ 525325 (+) True AMCG00008397
AMCG00008395 mRNA upstream 77423 506943 ~ 509857 (+) True AMCG00008395
AMCG00008396 mRNA upstream 80823 494240 ~ 506457 (+) True AMCG00008396
AMCG00008391 mRNA upstream 159935 425827 ~ 427345 (+) True AMCG00008391
AMCG00008403 mRNA downstream 20587 609033 ~ 629437 (+) True AMCG00008403
AMCG00008410 mRNA downstream 120802 709248 ~ 712619 (+) True AMCG00008410
AMCG00008412 mRNA downstream 127649 716095 ~ 719874 (+) True AMCG00008412
AMCG00008411 mRNA downstream 186945 775391 ~ 778431 (+) True AMCG00008411
AMCG00008418 mRNA downstream 196980 785426 ~ 799063 (+) True AMCG00008418
TU60995 other upstream 35374 550281 ~ 551906 (+) True G48811
TU60768 other upstream 419782 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 494400 87317 ~ 92880 (+) False AMCG00008369
TU61256 other downstream 288108 876554 ~ 879513 (+) True G49013
TU61359 other downstream 377392 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 734365 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 1342208 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 1503515 2091961 ~ 2105573 (+) False AMCG00008475

Expression Profile