RNA id: TU61386


Basic Information

Item Value
RNA id TU61386
length 3810
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G49110
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1092721 ~ 1096634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCATGTAGATACCTACATTTTTATTAGAAGTAACTTATTTTACAACTTGTCTGTTGTATACAAACATTGTGGAAAGGTGTTTCTGtacaagttttgttttaaactactTTTTAACAAGTAtaggaattaataaaaaaaatactctaTTACTGTTTCTAATAATACAAGACCAAGAACATATTGGTCACATCTTCAGTTTCACAATAATGCTAATacgaaatacattttctttttttttttagtacataattgtttttaaaaacatacgTCAGACACGTATTTACAAGCGCTGGAAGAATCCTGAAATGTACagagggttttgtttttgctcttgcGACGCGgactgcagctgaaatgatcAGCACGACGACAGAGCGCTCACGAGTGTGCCGTGCCGCATCTCTGTCCGTCTCTGACCTCAAACGATCTCGGCCGGTCACGGCAGACTCCGCGTGTCACGTGTGCCGATCCGTGTGTTATTTCGTTGCACGCTGTGGGGAGGCTTACGCGAGAGAAATGAATTGTGGCATTTTTCTAATCGGCCTCAATCGTTAATTGTTCTAGTTCAGTTGGAAAGAGAGGGGTGACGTTCGCGTGGGACAGTTTGGCCACAGTTGCTGGtttgaaaaacaagacagactTCTCAAAGCGTCTTTTTTCCATGAGGTGTTGAGAAGGATACTGGAAATTACGGATAGTTTGAGGAGCAACTTATTGAAATACCGACGGCAGTTTGAAGTCGCCCGTGTCAGTGACAGGCGGTGTGAATCTGGCCACTCGTGCTCTTTTCATCaagtctttttctctctttttaaaccAGCTGCTCCATCGCTTGCTTTCGGCCTCCGGGGGCCGCGCGTGGCAGACCCCTCCTCGCCGCGGCACGGGGAGTCACAGCGTCGACGCCGGACCGGGGGGCACCGGGCTCGTCTGGGAgcggggagagagggaggcagtggGCGAGCTGTCCGTCGTTTGTTTGGTGGCGGCAGTGCGACGCGGGACAGAGCGGACATCGGACAGAAACCACGGAGGAATGTGtcggttttctttttgttcctctctttcttttatacaacaataatcatcatcatcataataataatacaataataaggTCAGAGTGTACACAGGCCAACCTCTGTTAGTGTATCTGCTGAGGACCATGTCAGACACAATCGAATCACGCGGCCTTTTTGTTctggcaaaaaacaaacaaacaaaacattcgaacaaaaccacacaaaaaaaaacaacaaaaaaaaacaacgaacCCAACAACCGATTTGATTACATTGAacagtttataaaaacaaaaccaggaaaATACAGAATAGAAACGTGAGTGAAGGCATTCGCCCTGTAGAAACTATGATGTCAGAAGGGGTTTAATCCTCCCAGCCTCTCTCCGGCGCTGACTCGTGATTGGCTGGGGGACGGAGGCGCACGTGAATAGCGCCGGAGCGGGGCGGCCCTGCATGGCAGCGCGTTTCCCGCCCGGACTCCTCCTGTCGAGGCCCGAGAGCAGCTGAGAGACAGACCCACTACTGATACAGCGCACACACGCTATATGCCATTACATAACATGACTCTATTAAGAGTGACATGGCCGTAGCAGCCTGCACCTCAGCTGACCCGACCCCGGCCTCCCCCGTCGAGCCGCACGAGTCGCAATGGGCCGAGGGCTTCGATGGGCGGCTTCTGTGCATCCCTGTAACGAGCCGGCAGTGTTTGTGAACCAGATTACTTCAGACAGCAGGGTCCCTGCGTTATCACAGCCTGTCTCTGAGCAGCGGCATCTGTGCCAGAGTTCATCCGGTCCTTATTATAAGGCTGTGGATGTGAGCGTGCGTTTCTATTCTAGAGAGGCAACTGTGTGTCTTAAGGAAACCCCCCCTCCCCGCCCAACGATCGCTGCCGTTGTGGCCGAGGTGCCAGCGCTCCGGGTTGGGAGCTGAGGACGAGGGCcagaataaatatatgtaaatatattgagCTTAGTCAACTGTCTGTGGTCCCTGCAgagctatatatacacatcacattacaataaaaaagccAAGGAAGGCGGGGCTGTGATGGGTGTTTTGGTGGGTCTGTACTCCGACCCCGACATCGAGTTATTATACTCTGGGACCCCCTCCCCCGGGAGGCACTACGGCTCCAATATGGACGCCGGTGGAAAGCCAGCAGCAGCACGGGAGACGCACAGAGCGTGGCAGTGCCGGCCCTCTGTGCGCCGTCGCCCGCGTCTTAATACGGGATACAAATCTTAAAGGGATCGCAAAACAAGAAGGCAggcagtgttttgtttctttgcgcATCCCAAACTCAATTCAACACCGACCGAGGGCCTGGGACGCTCAAGGGTTCACGGGCGAAACGAGCATCATTCAAGACCCTCTGAAACACGACACCGACGTCTGCGGTGGAGGGAGGCGTGTTCGTGGGAAGGAGGCgtgtttcatgtttaaatgcGGGGTCTGAATCAGATTACTGGCCGTTAAAAACGATTATTAATCACAAGCATATTTCTCGAGATGCCCCGGCGAAGTGCTTATAGCGAGAGCTGCCTGTGAGTGGAGGGAGAGTGCGTAGAAAAAGGGGAGACTAGAGGGATTCTCTATGAATGAACGTAGAGCGAAGGCACAGCACGGAACTGGGCCCACTTCGAACCACGCTGTCCGTGGAGGCGGAGCACTGCCCATGTCCAGCTGTCCATTAGGAGTCTCGGCTCTGACCTCACAGGTTCTGCCCGGCCAATGCTGCGTCTCTGAATGTTGTCACCCCAGCCCCCCTACGCTTTTCTCCGCTGTGTTATTCGGCCGTGATCTAAACAGAGGTATGAAGCAATAATCGATCTCCAATCGCTGTGCAGACCGCCTGGGCAGTGATGAACAGTGGAGCTCTATttacagagggagggagagagacagggaactTGTAATACGGtcgaaaggaaaaaaaaatgataaataaataaaaaaaagattaaaaaaagagattTCCTTCAGCAGTTCTTTGTCCTCAAAAGCTAGCTTCTTCTTCTGCAGGAGAACATTTCCACAGTCTTTGAAATAAAAGACTTCATTCTTCATATAATATCATTTTCCCCccatttttccttttcctttttgatatcaaaaaatAAGTTCCTTGTCACCAGAAGGACAAGTCTTACTTCATTACATCGTCTTCTCTTActttcaaaagacaaaaaacacaatttttccctttactttttgttgtgttcccacttgcttgtaaaaatacaaacaaacccaatcgcatatacatttcttttttatattaaaataaaaaaaatctcaccGCGATCCAAAATCCGTATCCgtaaaaatctttatttttacgtttatttttcttctcgtAAAAGGAAGCCACTCCTTTACTGGAGCTCTCTTCTCGTGAAGGtccagagacacacagagggggGGCACCATCTCTCGTGTCTGCTCACCCCGCCGGGTCCGTTACGCAAACACCTGGGTCTTGCCGCCCTGCTCCTGGATGTGAGGGATCTGCGTCTGGGTCGTCCCCGCGATGGCCGGGCTGGGGGTGGAGTCTGACCAGTCGGAGACGGAGTGGGGCGAGGGGCTGGACCACGGCTCGGGGGACTCGGGGGAGGGCGTCAGGTAGGGGTGCTCGCTCTGCAGGTGGAGGTAATGCTTGGGGGTGGCGTCCAGGGCGGAGGTGTAGCTGTGCTGGGACGGGGGCGTGGGGTAGTCCTCCAGGGCGGGGTTGGCGCTGGGGGGCTGCTGGGCCGGCACTTGCTGCTGCTGGGGCTGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61383 lncRNA upstream 5563 1086570 ~ 1087158 (+) True G49107
TU61377 lncRNA upstream 24688 1063549 ~ 1068033 (+) True G49102
TU61335 lncRNA upstream 156440 933145 ~ 936281 (+) True G49069
TU61332 lncRNA upstream 161894 929706 ~ 930827 (+) True G49066
TU61233 lncRNA upstream 308740 765871 ~ 783981 (+) False G48996
TU61466 lncRNA downstream 65849 1162483 ~ 1162690 (+) True G49178
TU61514 lncRNA downstream 410079 1506713 ~ 1506935 (+) True G49221
TU61523 lncRNA downstream 528763 1625397 ~ 1628333 (+) True AMCG00008451
TU61528 lncRNA downstream 533306 1629940 ~ 1631543 (+) True G49233
TU61531 lncRNA downstream 545796 1642430 ~ 1741577 (+) True G49236
AMCG00008433 mRNA upstream 14325 1076130 ~ 1078396 (+) True AMCG00008433
AMCG00008432 mRNA upstream 36966 1052595 ~ 1055755 (+) True AMCG00008432
AMCG00008430 mRNA upstream 59410 1010395 ~ 1033311 (+) True AMCG00008430
AMCG00008431 mRNA upstream 97902 985977 ~ 994819 (+) True AMCG00008431
AMCG00008424 mRNA upstream 109065 976227 ~ 983656 (+) True AMCG00008424
AMCG00008441 mRNA downstream 142730 1239364 ~ 1245755 (+) True AMCG00008441
AMCG00008445 mRNA downstream 160887 1257521 ~ 1260216 (+) True AMCG00008445
AMCG00008446 mRNA downstream 183994 1280628 ~ 1288082 (+) True AMCG00008446
AMCG00008444 mRNA downstream 218973 1315607 ~ 1322747 (+) True AMCG00008444
AMCG00008447 mRNA downstream 347543 1444177 ~ 1444458 (+) True AMCG00008447
TU61359 other upstream 124138 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 213208 876554 ~ 879513 (+) True G49013
TU61033 other upstream 504275 587280 ~ 588446 (+) True G48846
TU60995 other upstream 540815 550281 ~ 551906 (+) True G48811
TU60768 other upstream 925223 166958 ~ 167498 (+) False AMCG00008375
TU61499 other downstream 226177 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 834020 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 995327 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 1031081 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 1112849 2209483 ~ 2211514 (+) True G49340

Expression Profile