RNA id: TU61499


Basic Information

Item Value
RNA id TU61499
length 1459
RNA type TUCP
GC content 0.44
exon number 1
gene id G49208
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1322811 ~ 1324269 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgtgtgtgtgtgtgagagagagagtgtgttacTCAACAATGGtgctaaagaaaacattttattataattttattatatcTGTTTCTAATTTTTActtggggggtggggatggCTCGAAGGGCAGCATTGAACAGAGGCCTACAGGTGCCCGAGCTGCCCCTCCCACACGTGTAACACAATTCCACTCGCTGCCGGTCCGGGAGAGGGACACCGTCTCGCACTCCTGCCGACTACGCTCTGATTCGTTTGTATGGAAAACAATAATCATGACAAGCCACTTTGAACCTGCCTCACGAACCCTCACAGCACACGCACTCGAGCGTTATCGTGCGTGCCCGAGGTCTAGCGTAGCGTATGTATCGTTAGACACCAGAGCCGGCCTACACAGACATCACTGTCTAAACTAGGCAGCGAGGAAAACGCCAGTTAAAGAGAAGTTCTGTTGTGTATGCCTACCCCTACACACTCCTCTTCACTGATACACTGTCTTTAGATTTTAAACACAGATTTTAACCCTCACGAAAAATATTGTTCTGTAATTCATTCATTCCGTTAGATTCTCTATATCATCTAATTCTATCACTGACTTACATGTTGCAGCAGGAGCCTGTGGCCTAAAAACCTCTCTGCACAGAAACACCTTTTTGATTTTCGTATCTTCCTCGATTCTATGTTTACATTTGTCGCTGGGAACCTCTGACCCGAGAGCAGATATTCTGGTGCTAATACAAGGAATACTCGAGTTGGGGAATCGATCCCACTATTTAAATCTGTAGCCATGGGCACGGACGCACAGTGAGACGCCCCTCCGACCGCCATGGATTCTGTCAGCAGCAATACAGGAAAACGGCCTTCATTACGTGCTGTAAAAgtgctgtattgtgtgtctgttaaCTACGGTCCCGTTTAACTGTGTGGGCATGCTCTGTACTGATGTAGATGAATATTATGCACtatcatgtttaataaaacactaaGACATACGGTTGGGTTACTTTTGCTGATCTACAGATTGttacatttgtgttatttttattagtttgttgCGTGTGTGCTAGCCTAACCTGAACCCCATTCTGTACATAGTATCCGTACAGCACCGCGATGGCCTGGCGACTCGTGCCACTGCAAGTATGTACATAATAGCAAAGTGCAATTAAAGGTCTCTTTCCCGATCATCTCTCAGACTGCGAGAGGATGATCCGAGCCCGTATTCCCCACTGCTACACAATAAAACTATCAGCATCTCAAGCAGTACAGCTTCAAtcctccccctgccccccaaaaCCCTGTTTGTATAGCGTATCTGTGGTACtaattttatatactgtacagttAAGTCTTTAAGAACAACAAGCGAACAAAACTCAACCATTGTTGCCTGAAtaagaattgtatttgtaaaaaaaaatcaaatgagtACGAATTGAAATAAAGTCATTTTGTTAAAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61466 lncRNA upstream 160121 1162483 ~ 1162690 (+) True G49178
TU61371 lncRNA upstream 205031 1080021 ~ 1117780 (+) True G49097
TU61376 lncRNA upstream 215521 1058561 ~ 1107290 (+) True G49101
TU61386 lncRNA upstream 226177 1092721 ~ 1096634 (+) True G49110
TU61383 lncRNA upstream 235653 1086570 ~ 1087158 (+) True G49107
TU61514 lncRNA downstream 182444 1506713 ~ 1506935 (+) True G49221
TU61523 lncRNA downstream 301128 1625397 ~ 1628333 (+) True AMCG00008451
TU61528 lncRNA downstream 305671 1629940 ~ 1631543 (+) True G49233
TU61531 lncRNA downstream 318161 1642430 ~ 1741577 (+) True G49236
TU61564 lncRNA downstream 475592 1799861 ~ 1856256 (+) True G49261
AMCG00008444 mRNA upstream 64 1315607 ~ 1322747 (+) True AMCG00008444
AMCG00008446 mRNA upstream 34729 1280628 ~ 1288082 (+) True AMCG00008446
AMCG00008445 mRNA upstream 62595 1257521 ~ 1260216 (+) True AMCG00008445
AMCG00008441 mRNA upstream 77056 1239364 ~ 1245755 (+) True AMCG00008441
AMCG00008433 mRNA upstream 244415 1076130 ~ 1078396 (+) True AMCG00008433
AMCG00008447 mRNA downstream 119908 1444177 ~ 1444458 (+) True AMCG00008447
AMCG00008449 mRNA downstream 148419 1472688 ~ 1473983 (+) True AMCG00008449
AMCG00008448 mRNA downstream 160741 1485010 ~ 1486403 (+) True AMCG00008448
AMCG00008450 mRNA downstream 172952 1497221 ~ 1506574 (+) True AMCG00008450
AMCG00008451 mRNA downstream 301025 1625294 ~ 1628071 (+) False AMCG00008451
TU61359 other upstream 354228 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 443298 876554 ~ 879513 (+) True G49013
TU61033 other upstream 734365 587280 ~ 588446 (+) True G48846
TU60995 other upstream 770905 550281 ~ 551906 (+) True G48811
TU60768 other upstream 1155313 166958 ~ 167498 (+) False AMCG00008375
TU61614 other downstream 606385 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 767692 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 803446 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 885214 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 1441610 2765879 ~ 2770044 (+) True G49523

Expression Profile