RNA id: TU61514


Basic Information

Item Value
RNA id TU61514
length 223
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G49221
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1506713 ~ 1506935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttacatttcaaatctaAATAGAGTGCTATTATTTATaaactgaaggggaaaaaaaataatattaaaaactaaaaactactACAAGAACAGCGtccagaaataaagaaaaagacaaagaactttcttctttcttttctgtttttttttcttttctttttgtggtCAGTGCGCATGGTTCTTTTTtgtgacaagaaaataaatatctaccTTTGTCATTTAA

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61466 lncRNA upstream 344023 1162483 ~ 1162690 (+) True G49178
TU61371 lncRNA upstream 388933 1080021 ~ 1117780 (+) True G49097
TU61376 lncRNA upstream 399423 1058561 ~ 1107290 (+) True G49101
TU61386 lncRNA upstream 410079 1092721 ~ 1096634 (+) True G49110
TU61383 lncRNA upstream 419555 1086570 ~ 1087158 (+) True G49107
TU61523 lncRNA downstream 118462 1625397 ~ 1628333 (+) True AMCG00008451
TU61528 lncRNA downstream 123005 1629940 ~ 1631543 (+) True G49233
TU61531 lncRNA downstream 135495 1642430 ~ 1741577 (+) True G49236
TU61564 lncRNA downstream 292926 1799861 ~ 1856256 (+) True G49261
TU61567 lncRNA downstream 296890 1803825 ~ 1806027 (+) True G49264
AMCG00008450 mRNA upstream 139 1497221 ~ 1506574 (+) True AMCG00008450
AMCG00008448 mRNA upstream 20310 1485010 ~ 1486403 (+) True AMCG00008448
AMCG00008449 mRNA upstream 32730 1472688 ~ 1473983 (+) True AMCG00008449
AMCG00008447 mRNA upstream 62255 1444177 ~ 1444458 (+) True AMCG00008447
AMCG00008444 mRNA upstream 183966 1315607 ~ 1322747 (+) True AMCG00008444
AMCG00008451 mRNA downstream 118359 1625294 ~ 1628071 (+) False AMCG00008451
AMCG00008455 mRNA downstream 204182 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008454 mRNA downstream 211237 1718172 ~ 1737515 (+) True AMCG00008454
AMCG00008459 mRNA downstream 287876 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008461 mRNA downstream 289409 1796344 ~ 1801758 (+) True AMCG00008461
TU61499 other upstream 182444 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 538130 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 627200 876554 ~ 879513 (+) True G49013
TU61033 other upstream 918267 587280 ~ 588446 (+) True G48846
TU60995 other upstream 954807 550281 ~ 551906 (+) True G48811
TU61614 other downstream 423719 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 585026 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 620780 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 702548 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 1258944 2765879 ~ 2770044 (+) True G49523

Expression Profile