RNA id: TU61528


Basic Information

Item Value
RNA id TU61528
length 1567
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G49233
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1629940 ~ 1631543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACCTTTTCAGAATGTCAGATAGCACACAGGAACCAgcacaaaacaaccaaaactaaaaactgtCTCCAGTGCCAGGGAAATACCAGTTGTAAAGAAATCTTACTGTTTAAGACAATCACAATTATcgaacatttttaatatatgaacaAATGCAGGCCCTACAATAACAGGTcctaatattttaatgtatccaAAACCCTATATTATCCCACCATCACAGTcctatgaataaatatataattaaatgaatgtgccATTGACTGATAAGGAAGTTACATTCagtgcatgtatatatagatagatacacacacacacatacatatatatgtgtgtgtatatacatatatacctCTATATTTGCAGACTTGTCCTATCTAAGGGTGCAGCAGAGTGAGATTCTTCCGTGCAACATGGATGATAAGACACATCAGGTCAGAAGAGAGGATATCAATGGTTATCAATAGATTTCCCATGCTTTCAATTGCACtgttatgtaaattggaatttgtcatgttttatgccttgaactgcactatTTTTGCCCtgtataagggtgtctgctaagaaataaataataattataataattatctgctgctgcttttcctGACGGGGCAGAAATCTGCGAGTTCCTGGATTCTTACGAAGGCTGGTCATGGGGTGCGCTCTTCCTGTAAGTCATGGTTAAAACTGGAAATAGCTGAGGGAAGCAAACCGCCGTGCAGTCGGTCACCATTTGGGAAATGACAAAAAGGAGAAGAGAAATAGGTGtcgacacagacacacaaaccacaGGCCGAGAATAGCCTACTGCACTAATGCTACTATGTTAAATGCCAGTGTAACTCCAAACGTGCACCATCAGAATCCGTCTCTCTCATTCATTCACTCaatcacactctccctctctcgaaAAAACAATCAGCCAGGCCATCTCCACCCCCCACAGAGTCAGTGATGAAAACCGTTAGTTGTAAAAGCAGGTGGGTCCCCTGGGAAATAATCTGGTGCTTCGGGGTGTTACTcatttttaatgtggtTCTATTTTGTGGAGCAGAGACCCCAGCCCCAGAGTCAATTGgcaaataaacaggaagtgaacGCTTTGGTGCTAaagctgacagacagacagactgtatGAGAGCCAGTCTGCGCACAGAATACAGAGAGACAAACATCTGACCAACAagacacaaaatcaaaaaagtCAAGAATCggaaaaaatactaaaaagtcCTTCACAGGGGAATGATGCGAGAATGTTCTTGAATAAATAAGAAAGCACGATGAAAGAGAAGGTTGTGGccttcagtcagtcagtgtgtgtgtgtatgtgtgtttctgtatcaCACTACTGGGCTTTGTGGGGCTCGTAGGTGGCAGTCTCTGGCTCAAGCTAGATCGGACAGGTCTGGGGTCCCCTCTTCACCCGTCACTGTCCCCCTTGGATGGGCACTCTCTTCCGTGGCGTTTCTCAGGATGCTCAGGAATCGTAGGGGACGTCCGACCGTCAGCAGTAGTCAGAGTAGTCCTCCTCGACGTAGTTGGACGGGAACAAGCCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61523 lncRNA upstream 1607 1625397 ~ 1628333 (+) True AMCG00008451
TU61514 lncRNA upstream 123005 1506713 ~ 1506935 (+) True G49221
TU61466 lncRNA upstream 467250 1162483 ~ 1162690 (+) True G49178
TU61371 lncRNA upstream 512160 1080021 ~ 1117780 (+) True G49097
TU61531 lncRNA downstream 10887 1642430 ~ 1741577 (+) True G49236
TU61564 lncRNA downstream 168318 1799861 ~ 1856256 (+) True G49261
TU61567 lncRNA downstream 172282 1803825 ~ 1806027 (+) True G49264
TU61576 lncRNA downstream 184041 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA downstream 206643 1838186 ~ 1839004 (+) True G49271
AMCG00008451 mRNA upstream 1869 1625294 ~ 1628071 (+) False AMCG00008451
AMCG00008450 mRNA upstream 123366 1497221 ~ 1506574 (+) True AMCG00008450
AMCG00008448 mRNA upstream 143537 1485010 ~ 1486403 (+) True AMCG00008448
AMCG00008449 mRNA upstream 155957 1472688 ~ 1473983 (+) True AMCG00008449
AMCG00008447 mRNA upstream 185482 1444177 ~ 1444458 (+) True AMCG00008447
AMCG00008455 mRNA downstream 79574 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008454 mRNA downstream 86629 1718172 ~ 1737515 (+) True AMCG00008454
AMCG00008459 mRNA downstream 163268 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008461 mRNA downstream 164801 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008458 mRNA downstream 242494 1874037 ~ 1880962 (+) True AMCG00008458
TU61499 other upstream 305671 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 661357 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 750427 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1041494 587280 ~ 588446 (+) True G48846
TU60995 other upstream 1078034 550281 ~ 551906 (+) True G48811
TU61614 other downstream 299111 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 460418 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 496172 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 577940 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 1134336 2765879 ~ 2770044 (+) True G49523

Expression Profile