RNA id: TU61567


Basic Information

Item Value
RNA id TU61567
length 1710
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G49264
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1803825 ~ 1806027 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATCCACACCACTGCTGGTTCCGACAGGGATCAGCGGCCGTGTTCGTCCATTTCCGGACAGAACCAGAGCGATTCCTCTGCATGAAGATCTTTGATTACCCTGATTGTTGGAATCCACAACAGTCTTCGAGTCGTTAAGTCTCACTATACCTTTTAATTGGTAtcttaaatgatttatttagtgACCTTTATTGTTAAGTATGTGgtgtatacatttcaaagtcTGAGATcgattaaagaaaacaaaactagtcatataaaataacagacaaCACACAAGTCTCTAaaattactatattattttgtttattaattatcctGTGTTGCCTTTAAGTTTAAGACTTTGGCACTGACTTTATTAACCTAATATAGGAGagcatttcataaaatgttttgtatcacaatgaaacaataaaataacatgaacacacagaaacacacacacacacacacaggcatgcacacacacactcatacagaaacacacacacacacacacaggcatgcacacacacactcatacagaaacacacacacaggcacaggcacacacacacacacacacacacacacacactcacacagaaacacacacacagacacacacacacagacatgcacacacacactcatacagaaacacacacacacacagaaacacacagaaacacaggcacgcatgcacgcacacagaTCTGATCTGGCTTCCAAAACAGCATCTCGAAAGACAATGGCCTTGGTCAGGAAATGAGGCCTGCAAAAACAAGGGAAAATATGAACAGAACGAACACTTTGATGTGATCATGTTTTGCAGGGACAGGGATTGTAAAGCATTAAGAGCTGTGGACACAAAGCACCAGCACAGGGTCTCTTTGAAACACCTGgaaactgttatttattttacagtttaaatgtcagtgtcagtgttcaAGGCAAATCAGCACAGTtgcatactgagacacacaatTCACAGGCAACACCTCGGTGTCTAATAAAGGCACTGAGGACAGAATGAGGAGATTGCATCAAGATGTAGGATAGATAAAAGAtcggaaaaaaaacattgcttttgacaatacacaaaacaaacaacctgtGCCGAGCGCATAGGCCCTTACAAACACACTAACACTATAAAGTAGGGTTCTTCAGAATTACAGAGAATATAAAGCACATCGCAACATcggttatttttttaatacagaaaatgacagTGTAGTGATCtaacaataaacaacaaaataatacaactgaAAATCTAACATCAGACCATATAAGTGCAGTGTGTTCAGGAAACACATCATCAGGTCTGATGGTATTAACTGCTGGTTAGTCAAGCGAGAAAGCAGCATGAGTAGACTGCTTTAATTGAGGGAAAGAGTGTGGGGGGAGAATAAGCATTTAGCGATCACACAATTAAAGACATCTGAAGGAAAGTGTGGGCCTGTTACTTTTACCAGCTCCCTTTGGGAATACAACAGGGCTGAACccaaaatattacacatttaaaaaaattaaaagcaggaaaatagAGCTGTAGAGCTGTAGGCGATTTCCTTCGCTGTGTTGAGTCCTGTTGGTTCCACAACCACAATGGCAGCTCCTGCTTCTTCATACAGTGTGTgcagttattacagcagcaccAATTCAGCTATTAGGATCACAAGGAACACAGAAGACACTATGGCGTTTCTTCTAGGGGCCGAAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61531 lncRNA upstream 62248 1642430 ~ 1741577 (+) True G49236
TU61528 lncRNA upstream 172282 1629940 ~ 1631543 (+) True G49233
TU61523 lncRNA upstream 175492 1625397 ~ 1628333 (+) True AMCG00008451
TU61514 lncRNA upstream 296890 1506713 ~ 1506935 (+) True G49221
TU61466 lncRNA upstream 641135 1162483 ~ 1162690 (+) True G49178
TU61576 lncRNA downstream 9557 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA downstream 32159 1838186 ~ 1839004 (+) True G49271
TU61609 lncRNA downstream 102796 1908823 ~ 1910419 (+) True G49294
TU61586 lncRNA downstream 262030 2068057 ~ 2075649 (+) True AMCG00008473
TU61648 lncRNA downstream 357292 2163319 ~ 2208477 (+) True G49321
AMCG00008461 mRNA upstream 2067 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008459 mRNA upstream 8023 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008454 mRNA upstream 66310 1718172 ~ 1737515 (+) True AMCG00008454
AMCG00008455 mRNA upstream 86958 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008451 mRNA upstream 175754 1625294 ~ 1628071 (+) False AMCG00008451
AMCG00008458 mRNA downstream 68010 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008460 mRNA downstream 78340 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008468 mRNA downstream 85069 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008472 mRNA downstream 224761 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008473 mRNA downstream 256529 2062556 ~ 2072046 (+) False AMCG00008473
TU61499 other upstream 479556 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 835242 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 924312 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1215379 587280 ~ 588446 (+) True G48846
TU60995 other upstream 1251919 550281 ~ 551906 (+) True G48811
TU61614 other downstream 124627 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 285934 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 321688 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 403456 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 959852 2765879 ~ 2770044 (+) True G49523

Expression Profile