RNA id: TU61576


Basic Information

Item Value
RNA id TU61576
length 2055
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G49270
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1815584 ~ 1848738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGGAGCTGGCACAAGAGATTGCCTCACAGAGAAAGAGCCAGGGAGTCAGGGtgtcagagagaaaataaatatggtaaGTATGGTTCTTTTTGTATTagaattgtaatttaattttaataagcaGTGTCTGTAGTCCACACCCAATTCCTGTCACCACCcagattatttaatatttttcacaagCACATGAGGTTTCTTATACATCTCAAAATGTGTCAGGGGTAAGAATCTATTCTTTGCTTTTGTCCCTCATTTTCTCACTGGCTGcgttcttttaaaaaacaggaaCTTTGATATCCACAGGAACGTACATGATACAAATATGCCAACACCAGCAAATGACAATGATGTTTTATTCAGTATGTACACAGAGATGGAATTAAATCGAGAACAAAACAACTGTACATCTGCTgcataatagaaaaataaaataacaatatataaataaaattgaaacacTGTACTTTGCATGTATCAATATTCTTTGTTGTCACAATAGCTATTGCTTCAGTTCTATACAGTTTGATGGTAGAAACTCTGAACCGAGAAGAATTCGGAAAAACTGAATCGTGGTGCTCAGAATATCAGTAAGGGGCCCGATAAGGAAGAGAACAATCCAGggttatggttttattttcaagggGGAAGAACTACAATGGTAGTAGGTAGGTAAAGAACATTTCCTCAGATGATTCTTTGAGGAAAGAGAAAATAGCAAAATGGTAAAAACTGCTAAACTCTCCATAATACAGTGAGCGGGAGAGTTGTGCACTTTTCCTGACTGTCGATACTGCACCTGTGGTGAGACCAATCGGGTGTATAGATGTTTGAAATCCTGAAGCCCTCTGGTGCATTGAAAGCACTTCAGCCTGTCGGTTCAACAAACActaataaaagcaaaatcatCAAGCGTAAAGCAAAGATGCCAttgcttaaaaagaaaagcaaacggCAAGAAAAgtaataacataaatacaaaaaaagactcTTCAGTTTGTCCACAGCTCATTTTGCAACCGCATGCGGATATTGTATCAGTTGTGTCGCTTTGAGGCCGTTGACCATTGATTTCTGTTACCACTCGAAATCTTGTGACACAGTCATGATGAAATCTGCTTTGTCAAGCAGATCATTTTCCCGACAGTGGACTGCAGCTGAGAACTCCCCCCCCGTCGCCAGCCACTCTTAATTACAACACCGTTACTCACATTGTGACTTCCTCTTCTTACACAGCTGTACTACAGCACATTTCATCATTACAAAGCACACCAGCTCCATCTGGGGGGATTGTGGggggcagaaaaacaaatatgaagtaATTTGGATATCTCAAAGTGCTCCTGCAAAATGAAATGCGCCAACAAAGTCTCGGCCCCCAGAACAGGAATCACGAGAGCTACAGCGCTTTTTCAGCCAACTGTGAAACTGGTGTCATTTTCACATATTCCTCCCGACAACCAATGTGGTCTCTTCCTGGGGGTTTTGCAGTTTGTACCTCCGATCCATGGTTTTCTCATGGGCAGGAAAACATTGTCAACTCTCTTCAAACCTCTTAAACCCTCGACTCATTTTCCCTGGACTTccttcaccccccacccccccttcaaAGAAGTAGGTGTTTCGGAAATGCCATAATACAAGGTGAGGGAAAGGCACAGAAGCAAGGACAGTCTGGTTAATCCTAACGATTCAAGTTTGAGTGTCAGCACGTAGTTTCCAGTTGTGAGAGTCATGCAAAAGTCTCTTTTTTGGAGTGGAATTAGATAAAGTCATTGAGGGGCTTTTGGAGTGCTAGTGAGGAATCTGTACCTTTCTTAGAAGCTGTGGAGAGAGTTGCCGTTGGCTCAGACTGTGGGCAGCGTCTCCAGTGCAATGCCGTCTGAGTGTCCGTTGTGCAGAAGACTTCCGTTGGCTTGTGAACCTTGTTGGCCTACTATTATATAATTTCCTCTTTTATGTCTATAGTCCTTTATAAAGGCACAAATCAGTATCaccagcagaattaaaaaaataattcctaCTATAATCCCAATAATTATTGCAGAGCCAcca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61567 lncRNA upstream 9557 1803825 ~ 1806027 (+) True G49264
TU61531 lncRNA upstream 74007 1642430 ~ 1741577 (+) True G49236
TU61528 lncRNA upstream 184041 1629940 ~ 1631543 (+) True G49233
TU61523 lncRNA upstream 187251 1625397 ~ 1628333 (+) True AMCG00008451
TU61514 lncRNA upstream 308649 1506713 ~ 1506935 (+) True G49221
TU61609 lncRNA downstream 60085 1908823 ~ 1910419 (+) True G49294
TU61586 lncRNA downstream 219319 2068057 ~ 2075649 (+) True AMCG00008473
TU61648 lncRNA downstream 314581 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 363691 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 596447 2445185 ~ 2464667 (+) True G49431
AMCG00008461 mRNA upstream 13826 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008459 mRNA upstream 19782 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008454 mRNA upstream 78069 1718172 ~ 1737515 (+) True AMCG00008454
AMCG00008455 mRNA upstream 98717 1711117 ~ 1716867 (+) True AMCG00008455
AMCG00008451 mRNA upstream 187513 1625294 ~ 1628071 (+) False AMCG00008451
AMCG00008458 mRNA downstream 25299 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008460 mRNA downstream 35629 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008468 mRNA downstream 42358 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008472 mRNA downstream 182050 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008473 mRNA downstream 213818 2062556 ~ 2072046 (+) False AMCG00008473
TU61499 other upstream 491315 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 847001 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 936071 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1227138 587280 ~ 588446 (+) True G48846
TU60995 other upstream 1263678 550281 ~ 551906 (+) True G48811
TU61614 other downstream 81916 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 243223 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 278977 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 360745 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 917141 2765879 ~ 2770044 (+) True G49523

Expression Profile