RNA id: TU61609



Basic Information


Item Value
RNA id TU61609
length 343
lncRNA type inter_gene
GC content 0.52
exon number 6
gene id G49294
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1908823 ~ 1910419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGCTCGTCCAGGGCATTATCGGGGTCTCCCTGGAAAAACTTTAGGTCCGAGTCGTCCAGGTATTGCCGGCAGTCCGGGCATTTGGGAGGCGGAGTCTTGGCTGGCGGTACAGGTTTCTTCTCCATAGCAGCATCTTTAGTCTCAGGCTTTTCCTCCGATTCAATCTTTAATCTCTTCTCGTCTTGTgacttctcttcctcctcctgctcttcctcctctttAGCCTTCGGCTCCTCCACTCCATTCGCTTCATCGGATTTACGCTTGGCTGGGACTTTTGAAAACATGGACAAGATTGTCGGTTGCCTCGCCGAGTTTCTGGTGACCCTTGAACTGACTGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61564 lncRNA upstream 52567 1799861 ~ 1856256 (+) True G49261
TU61576 lncRNA upstream 60085 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA upstream 69819 1838186 ~ 1839004 (+) True G49271
TU61567 lncRNA upstream 102796 1803825 ~ 1806027 (+) True G49264
TU61531 lncRNA upstream 167246 1642430 ~ 1741577 (+) True G49236
TU61586 lncRNA downstream 157638 2068057 ~ 2075649 (+) True AMCG00008473
TU61648 lncRNA downstream 252900 2163319 ~ 2208477 (+) True G49321
TU61672 lncRNA downstream 302010 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 534766 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 901755 2812174 ~ 2812893 (+) True G49541
AMCG00008468 mRNA upstream 14596 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008460 mRNA upstream 19056 1884367 ~ 1889767 (+) True AMCG00008460
AMCG00008458 mRNA upstream 27861 1874037 ~ 1880962 (+) True AMCG00008458
AMCG00008461 mRNA upstream 107065 1796344 ~ 1801758 (+) True AMCG00008461
AMCG00008459 mRNA upstream 113021 1794811 ~ 1795802 (+) True AMCG00008459
AMCG00008472 mRNA downstream 120369 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008473 mRNA downstream 152137 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008475 mRNA downstream 178061 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008476 mRNA downstream 223427 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008478 mRNA downstream 346038 2256457 ~ 2257456 (+) True AMCG00008478
TU61499 other upstream 584554 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 940240 965838 ~ 968583 (+) True AMCG00008423
TU61256 other upstream 1029310 876554 ~ 879513 (+) True G49013
TU61033 other upstream 1320377 587280 ~ 588446 (+) True G48846
TU60995 other upstream 1356917 550281 ~ 551906 (+) True G48811
TU61614 other downstream 20235 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 181542 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 217296 2127715 ~ 2143310 (+) True AMCG00008476
TU61670 other downstream 299064 2209483 ~ 2211514 (+) True G49340
TU61936 other downstream 855460 2765879 ~ 2770044 (+) True G49523

Expression Profile