RNA id: TU61670


Basic Information

Item Value
RNA id TU61670
length 658
RNA type TUCP
GC content 0.60
exon number 4
gene id G49340
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2209483 ~ 2211514 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGCAAGTCCAGGATCTTGAGGCCTACCTTGATCTTGGTGAAGAACTGTCGGAAGCAGCCCCTGGGGTCGACCTTCAGGCTCTTGGCCAGCTCCAGGATGAACTGCATCACGATGGTCTGGTGGGCCACCTGCTCCATCAGGGCATGtttCTCCTCCACTTCCAGGTCGATGCACATGATGACCAGGTAGTTGGCCGTCTCCTCGCACACCAGGTGGGGGTTGTCCGACAGGTATTTCTGGCTGTCGTCCCAGCGCCGCAGCATACCGAAATGTTTGATCTGTTTCTCGTTCTTCTCCACGAAGGTCTTGTGCTTctgctccttctcctcctccgtCTCCTCTGACTTGTCCGGCTTGATGTTGACCACACTCTTGCTGAAGCCCTCCTTGCTCAGCGTGTCCACGTTCCAGGGcatcttcttctcctccttgcGGTGGCTGTCCACCTTCTTCTCGCACTCGCGCTCCTCCTTCCTCAGCTGCTTCTCCTCGCTCTGCAGCCTGGCCAGCTCCGCCTTGGCGTCGTCCGTGCCCGAGAGCTCCAGCTCCTTCATGCGGCGCTGCACCTCGGCGACCTTCCTCTTGCTCTCCGCCAGGGACTTCTCCAGCTCCTCACGCTCCTTGTTGAACTGCTCCATGCGCTCCACGCGAGcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61648 lncRNA upstream 1006 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 133834 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 299064 1908823 ~ 1910419 (+) True G49294
TU61576 lncRNA upstream 360745 1815584 ~ 1848738 (+) True G49270
TU61582 lncRNA upstream 370479 1838186 ~ 1839004 (+) True G49271
TU61672 lncRNA downstream 915 2212429 ~ 2213493 (+) True G49341
TU61817 lncRNA downstream 233671 2445185 ~ 2464667 (+) True G49431
TU61966 lncRNA downstream 600660 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 674317 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 698148 2909662 ~ 2910628 (+) True G49598
AMCG00008476 mRNA upstream 66089 2133846 ~ 2143394 (+) False AMCG00008476
AMCG00008475 mRNA upstream 101691 2088480 ~ 2107792 (+) True AMCG00008475
AMCG00008473 mRNA upstream 137437 2062556 ~ 2072046 (+) False AMCG00008473
AMCG00008472 mRNA upstream 162546 2030788 ~ 2046937 (+) True AMCG00008472
AMCG00008468 mRNA upstream 315256 1891096 ~ 1894227 (+) True AMCG00008468
AMCG00008478 mRNA downstream 44943 2256457 ~ 2257456 (+) True AMCG00008478
AMCG00008479 mRNA downstream 65277 2276791 ~ 2277090 (+) True AMCG00008479
AMCG00008484 mRNA downstream 183550 2395064 ~ 2402598 (+) True AMCG00008484
AMCG00008485 mRNA downstream 208826 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008483 mRNA downstream 212881 2424395 ~ 2430781 (+) True AMCG00008483
TU61627 other upstream 66173 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 103910 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 272981 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 885214 1322811 ~ 1324269 (+) True G49208
TU61359 other upstream 1240900 965838 ~ 968583 (+) True AMCG00008423
TU61936 other downstream 554365 2765879 ~ 2770044 (+) True G49523
TU62012 other downstream 675252 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1944574 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1950544 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 2350477 4561991 ~ 4572734 (+) True AMCG00008580

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001382 True 1095 mRNA 0.57 10 NC_007112.7 59007536 ~ 59014053 (+)