RNA id: TU61798


Basic Information

Item Value
RNA id TU61798
length 335
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G49414
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2236527 ~ 2236861 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggacctgaaccttttcaccctggaacagaggagactacgtggggacttgagtcaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagacgggataggatccttgatcacttagttattaatggacaccaaacgagcacgatggggcgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61770 lncRNA downstream 160879 2068083 ~ 2075648 (-) True G49393
TU61771 lncRNA downstream 165655 2069790 ~ 2070872 (-) True G49394
TU61753 lncRNA downstream 170232 2054515 ~ 2066295 (-) True G49389
TU61756 lncRNA downstream 170232 2054515 ~ 2066295 (-) False G49389
TU61749 lncRNA downstream 172971 2057733 ~ 2063556 (-) False G49389
TU61803 lncRNA upstream 122999 2359860 ~ 2360112 (-) True G49419
TU61850 lncRNA upstream 140144 2377005 ~ 2436757 (-) True G49462
TU61913 lncRNA upstream 400054 2636915 ~ 2702422 (-) True AMCG00008491
TU61973 lncRNA upstream 586380 2823241 ~ 2823976 (-) True G49547
TU62048 lncRNA upstream 672801 2909662 ~ 2910628 (-) True G49606
AMCG00008480 mRNA downstream 23690 2208173 ~ 2212837 (-) True AMCG00008480
AMCG00008481 mRNA downstream 33084 2172836 ~ 2203443 (-) True AMCG00008481
AMCG00008482 mRNA downstream 63854 2169331 ~ 2172673 (-) True AMCG00008482
AMCG00008477 mRNA downstream 70877 2152611 ~ 2165650 (-) True AMCG00008477
AMCG00008474 mRNA downstream 151502 2073783 ~ 2085025 (-) False AMCG00008474
AMCG00008486 mRNA upstream 201848 2438709 ~ 2445212 (-) True AMCG00008486
AMCG00008488 mRNA upstream 253016 2489877 ~ 2535361 (-) True AMCG00008488
AMCG00008491 mRNA upstream 401563 2638424 ~ 2647417 (-) False AMCG00008491
AMCG00008492 mRNA upstream 413831 2650692 ~ 2658093 (-) True AMCG00008492
AMCG00008490 mRNA upstream 431596 2668457 ~ 2673435 (-) True AMCG00008490
TU61772 other downstream 151521 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 355565 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 386245 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1295875 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 1388481 841883 ~ 848046 (-) True G49054
TU62046 other upstream 669814 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 1537722 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 3512029 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 3550889 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 4711028 6947889 ~ 7151472 (-) False G50476

Expression Profile