RNA id: TU61936



Basic Information


Item Value
RNA id TU61936
length 588
RNA type TUCP
GC content 0.52
exon number 2
gene id G49523
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2765879 ~ 2770044 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGCAGCAGAAGAGCGAGGGAGAGATGTTTCCTTGCGAGGCCCAGCAGGAGACTCTCGGAACTACAGAACACCCACTCTGGCATTCCTGCCACTTCCCCGACAGCAGCCAATGCGGGAGAGCTTTTTCATACCAGCTTTTCCTGACAAGTACGAGATGGGCGCAGGTGCGGTGATGACATCTCACCCAGTGCCACGCCTGTCTGGACCCACAGAGAGGTTCAAACCCCAGACTCGTCAGTCACATCCCAGCCCCCGCCTCGGGCTGCGTCCCATTTCGATAACAACGCAGCCGGCCATGCTGCAGGCGGGGAACCTGCTCACCTTCCCAGCGACAGCCCCTGAGGACTGAGGGCTCTTGTTCTGGCTTTAAATGTTGAGCTAAAAAGTCACAGTTTTGTGTGAGAGGGCGGAGGGTGGAAACAGCTCTTTGAATGCACCCAGATAGTCTTCCTGCTTTTATAAACAAGATCCTGCTTTAACTTTCACACTTTCTGCACTGTAGTTCCCATGAGAGTTTAATTGTGTTGTCAAAAGTCTCTAATAAGTCggtaattcaataaataaacaaaccacatcTATTGAACGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61817 lncRNA upstream 301212 2445185 ~ 2464667 (+) True G49431
TU61672 lncRNA upstream 552386 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 557402 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 690230 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 855460 1908823 ~ 1910419 (+) True G49294
TU61966 lncRNA downstream 42130 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 115787 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 139618 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 140650 2910694 ~ 2910939 (+) True G49599
TU62082 lncRNA downstream 257934 3027978 ~ 3042595 (+) True G49636
AMCG00008493 mRNA upstream 45218 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008489 mRNA upstream 135680 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008487 mRNA upstream 249370 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008483 mRNA upstream 335098 2424395 ~ 2430781 (+) True AMCG00008483
AMCG00008485 mRNA upstream 343870 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008499 mRNA downstream 17824 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008498 mRNA downstream 28496 2798540 ~ 2811299 (+) True AMCG00008498
AMCG00008497 mRNA downstream 45352 2815396 ~ 2823096 (+) True AMCG00008497
AMCG00008505 mRNA downstream 134515 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008509 mRNA downstream 224897 2994941 ~ 3003560 (+) True AMCG00008509
TU61670 other upstream 554365 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 622569 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 660306 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 829377 1930654 ~ 1936502 (+) True G49298
TU61499 other upstream 1441610 1322811 ~ 1324269 (+) True G49208
TU62012 other downstream 116722 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1386044 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1392014 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1791947 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2825979 5596023 ~ 5596799 (+) True G50215

Expression Profile