RNA id: TU62012



Basic Information


Item Value
RNA id TU62012
length 1019
RNA type TUCP
GC content 0.53
exon number 4
gene id G49583
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2886766 ~ 2888896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGTTGGTAAGATTTCTTTATTGTAGTTTTGAGATCCAGTGACACTGACACGTACAGAAGGGCCCCACCGCCCCAGGGTGGGGATGACCCCTTGAcctgctttttaattaaaaacacagcacagtactCCGGAGTGCGTttctacagacacacacacacacacccccacccacccacacacgcacatgcattCACGTACTGAGTTACACAGACTCCTGGCGCTGTACCTGGAATACAGTCCTGCGTGGAAATACAGACCGACCGacgaacacaaaacaaaaaggtaaaaaaagaCGATGGGAAAGAAAACGAACGTAACTAAACTGTTCCCACGGTTCGCCGTTGAGCTGGAAGTTCGTTACCCACTGCAGGAAAGAAACGAAACAGAGGGCAAGACATTAAAACAGTCCTACATTTCATACCGGCCTTGTATAAATATGGAAgtgggtttattattatttaatttttttattatttttatgactttaatacatttttcactaaAAATCTGCTCATCTAGGAATTCTACCCCTCGCCGTCGCTCTCAATAAAATATAGGTGTGCGTTCTCGGGACAGATGGCAGTGGAACGGTCCTCCGGGCCTCAGTCCTCCTCGCTGCCGGTGGCCGAGCGGTCctcctcctgctcctcctcgcTGTCGTCGTCGCTGACCACCGGCTTGGCTCTGGAACCGCGGCCCAACCGGCGCCGGCCCTTGCCGCGCTCCTGGCTCTTCTCCTTGCGGCCCAGCTTGATCTTCACCTTCACGGAGCGTGACTCCGACTCGGAGCCCTCGtccacctcctcttcctcctcctcgctcTCGTCACCCTCGCTGTCCTCCTCCTTCTCGATCTTCTGCCGCACGCTTGTGAACACCGACTGGAGCACGATGGAGTCCTCGTATATCTGTTCGTCCAGCGATCCCTCCAGGTTGAAGGTCTGGGCGTTCTGGCACAGTAGCATCACGTCCTTCTCTAGGTCGTTCAGGCTGCGGTACTTGTGGTTGCGGATCCTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62010 lncRNA upstream 628 2885831 ~ 2886138 (+) True G49582
TU61966 lncRNA upstream 73873 2812174 ~ 2812893 (+) True G49541
TU61817 lncRNA upstream 422099 2445185 ~ 2464667 (+) True G49431
TU61672 lncRNA upstream 673273 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 678289 2163319 ~ 2208477 (+) True G49321
TU62038 lncRNA downstream 20766 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 21798 2910694 ~ 2910939 (+) True G49599
TU62082 lncRNA downstream 139082 3027978 ~ 3042595 (+) True G49636
TU62224 lncRNA downstream 467803 3356699 ~ 3359529 (+) True G49738
TU62242 lncRNA downstream 525285 3414181 ~ 3443897 (+) True G49754
AMCG00008497 mRNA upstream 63670 2815396 ~ 2823096 (+) True AMCG00008497
AMCG00008498 mRNA upstream 75467 2798540 ~ 2811299 (+) True AMCG00008498
AMCG00008499 mRNA upstream 92886 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008493 mRNA upstream 166105 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008489 mRNA upstream 256567 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008505 mRNA downstream 15663 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008509 mRNA downstream 106045 2994941 ~ 3003560 (+) True AMCG00008509
AMCG00008510 mRNA downstream 127560 3016456 ~ 3019921 (+) True AMCG00008510
AMCG00008514 mRNA downstream 131699 3020595 ~ 3021066 (+) True AMCG00008514
AMCG00008516 mRNA downstream 198284 3087180 ~ 3102783 (+) True AMCG00008516
TU61936 other upstream 116722 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 675252 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 743456 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 781193 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 950264 1930654 ~ 1936502 (+) True G49298
TU62528 other downstream 1267192 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1273162 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1673095 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2707127 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2849645 5738541 ~ 5742750 (+) True G50243

Expression Profile