RNA id: TU62046


Basic Information

Item Value
RNA id TU62046
length 1968
RNA type TUCP
GC content 0.52
exon number 2
gene id G49605
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2906675 ~ 2908665 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNGGCTGGAATGTGAAGCGGCAGGGGATGGGGGTCCCCAGGAGCAGGGTGGGGGTCCCGCTGTGTTGAATAAAGAGACCACACAGCACACTTGTTCATTCGTCCTGCAGAAGCTCTTGAGCGTCGCTTCGgcagggtttatttttttattattcttatttattgtgGGGTTTCATCATGGGCAACATTACACCAGCAAATGATCGCACTGCAGCTAATTCCTCCGCACTACCTGGCCTCCGAGGTCTCGGTTGCTCCGAAAATGACCGCGCCACCCAGATAAAAGAGGGGGGAGAAcactcctttctttctctcaccGCTCTGCACTGTAGCGACGAGAGAGGGAGTCTGTTTATTTCCTCAATCTGCTCACTGCTCTTCAGCTTTAAGGGCTAATGTACTCTCTAGCAAACCACAATCTTTATCGGAAAGCTTTTACATGAGGAAGGAGCTCCCTAACTCGTGTCTTCACCACTGCATTCGGTTTCCCTTTCCCTCTTGATCGCCAAATCAGGTCCTCAGCCTCTCTTTGGTCGGAGTGGGCGTGTCATTTCACACCTCCGAGCCCAGACCTTAAGTGCGACGTCAACATGACCCCTCGTGCGCGGGTTACAGGGCATACAGGGCAGTACAGGACCCTGCGCCCGACCCAAGGCCTGGGGGACGCATCCGATCTGTGCAATAAAAAACGCAAACACTCGGAGGAAGAAACGGGTCAATTCAAGCTGTAGATTTTTgctgctttttcctttttattgtttgcaCTGTCTATCCTGTTGTCTGTGATCTTTGTGGTTATCCGCCATCGCCGTTTTTTGCCAAATTGGGGGGTTTCGGAGACGGGAAGGCAGGGGCTCCGTTTCATGAGGACAGAACTGTCACTCGGCAGTTCCAGACCCGGGCCTCGGGGAATCGCTCTCCTGCACGCGAGATGCTTCTTGAATCTCTGGGCTGGGCTGGTGTTCGCTGGGTGTATAGTTTGCTGCCGAGGGGCACAGTGTGATGCTAATTGGCTTCCCCTCATCGACTTCCTGTCCGGTTTGCCGAAAGTCCCATAATGGAAATGGATTTTCACCTAATCTGGCCGATGATGATAATCCCAGCAGCACTTAACGACAATCTGAGAGAGCGCACACAACGGGATGTGAGAGAAGCGAGAGTCGAAGGGACGCTTCCCGTCCACCCGTCTGTCCCATCCCTCCGAGCGGCGGATCGACTGTGTAAACTTGCCTGGGTTTTTAagagacatataatttatgaatatGTGATGTTAAATCGAACGCTGTATAGAAAGTccgaaacactttttttctcaatCTGAAGTTGTCGACTAGTTTTCCTTCTGCAATCGGTTGTATTTTATGAAGAacggggaagaaaaaaatacacaatttctcAAAGCAGACTAATTGTCCCTGCTGTATCTTTACAGGAAGTGTTTGTACAAAATGctcaataacaataaattagtttaaaaaatgtctgtgctCTTTGTCAgtccttgtgtgtgtttgtacaacTGCAGTAACAGCAGATTTTACTCTCGGACCATGTGGGGGGGTTAGGCAGGCTAGATTGGTTGGTTCGGGGGCGTTTGGTCTTCCAGTCAGCATTTGATCCATAGGCCACACACTGCAATACTTGAGAGTGAAGCAATGTCTGGGAAATCGATGTTCTGTGCTCATCTGGCGCAGGATGGTTCAACCGGCCGGCACCAACCTCAGGTCCCGGCCGTACTGCTGGAAGTACAGGTAGGAGTGGTACTGCAGCTCGGGCAGCACCAGCCGCAGACACGAGCCCTGCTCCTGCGCACTCAGGTTGCCCCGCAGGTCGTAGCCCAAGATGGTGGCGGAGTTGGGCTGCCAGGGCCGCAGCAGGTCCTCCAGCTCCCCAGGGGGGACGCCCTCTCTTTGCAGACAGCGCCGCCGCGTCCGCCTCGCCAGCGCCCTCAGCTCCCGTACGCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61973 lncRNA downstream 82699 2823241 ~ 2823976 (-) True G49547
TU61913 lncRNA downstream 204253 2636915 ~ 2702422 (-) True AMCG00008491
TU61850 lncRNA downstream 469918 2377005 ~ 2436757 (-) True G49462
TU61803 lncRNA downstream 546563 2359860 ~ 2360112 (-) True G49419
TU61798 lncRNA downstream 669814 2236527 ~ 2236861 (-) True G49414
TU62048 lncRNA upstream 997 2909662 ~ 2910628 (-) True G49606
TU62058 lncRNA upstream 66284 2974949 ~ 2975153 (-) True G49614
TU62306 lncRNA upstream 464879 3373544 ~ 3379324 (-) True G49802
TU62310 lncRNA upstream 481538 3390203 ~ 3392090 (-) True G49806
TU62317 lncRNA upstream 505516 3414181 ~ 3443909 (-) True G49811
AMCG00008506 mRNA downstream 3480 2886767 ~ 2903195 (-) True AMCG00008506
AMCG00008502 mRNA downstream 34624 2854383 ~ 2872051 (-) True AMCG00008502
AMCG00008504 mRNA downstream 60784 2839095 ~ 2845891 (-) True AMCG00008504
AMCG00008500 mRNA downstream 71359 2832719 ~ 2835316 (-) True AMCG00008500
AMCG00008501 mRNA downstream 74503 2824461 ~ 2832172 (-) True AMCG00008501
AMCG00008507 mRNA upstream 2312 2910977 ~ 2913789 (-) True AMCG00008507
AMCG00008508 mRNA upstream 14220 2922885 ~ 2950000 (-) True AMCG00008508
AMCG00008512 mRNA upstream 103192 3011857 ~ 3014067 (-) True AMCG00008512
AMCG00008513 mRNA upstream 113078 3021743 ~ 3023525 (-) True AMCG00008513
AMCG00008511 mRNA upstream 120004 3028669 ~ 3029688 (-) True AMCG00008511
TU61772 other downstream 821669 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1025713 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1056393 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1966023 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 2058629 841883 ~ 848046 (-) True G49054
TU62371 other upstream 865918 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2840225 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2879085 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 4039224 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 4236960 7145625 ~ 7151472 (-) True G50476

Expression Profile