RNA id: TU62082


Basic Information

Item Value
RNA id TU62082
length 1223
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G49636
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3027978 ~ 3042595 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttgttgttgttgttttttaaagatattttacttaaatatcccttgtacaaaaaacaaagaccgTAAACATGTGACATAACGATTCTGTGGGTCAACCCCCAGAAtccaataatttaaaacacttggGAATGcagcattaaaacacaacagaataaaaatgagaaTAAATTTAAGACAAACAGAAATCATCCCCCATCTATAGACAtccccccacaaacacacacacataatgttGATCTGAATTAGTCGAATATCGGCAATGTGTTAAACCTGCACAACGATGCGCCAAGTGTTTCTAGAGTCACTGGTGTAACACTGAGGGTCACAATGCACCCTGTGCATCTGTAGAGTAAACCGGAAGTACCATTCAAAAAGAATCCATACAAATATAGAAccatatcttttttttgttttacatacttCAGATTATTGTTAtctacaaaacaaagaaacaaaaatacctCAGCCGGTAATTTgctcattttcaaaatgaaaaaacaacaaatggcTCAATATTCATATTGACAATACAATAGTATATTCCAGTGCTGCAAGTGCAAGAAGGTTATTGtatcttttggtttgttttacagaataaaacatacacGGCACAGAAGTCTGTCCTccagtgtttctttctttctctctccacgCTTTCATGGTGTGAATGTCTCTGCCGCCGCCGCGCTTCAGAAGGACTCCATCTTGGTGGACAACATGAGCTGACAGCCGCTGCTGACGTGGGTCAGGACTTTCTGTTTCAGCTGGGCCACCTGCTCCCGCAGCAGCgacgccgtgttggacaggccggCATTGTCCGTCTTCAGGATCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGTCGGCGGCACTTGGTCGCCGCCAGCCGGTTCCGCAGCCGCTTGCGCTCCGCCTTGATGCGCTCCTGGTTCTCCATGTCGATCGGCGACATCGGCGGGGACCCGTCGCTGCTCTGCAGGTCCGGGACGGTCTGGGGCTCCTCCTTGAGCGCGACGAGCCGCTGCGACTGCAACGCCGCCGCAGGAAGCGAGGGCTGGAAGTGATGCGCTGCGTGCGTCGGCGCCTGCGGCGGCtgctggtgctgGTGGGGGGGGGCTCTGACCTTTATCTCGAGCCAGGCGTTCCCACAGTTGCCCTCCCTGGCCCCCTGTCATCAAAGCCCAGCGTGTGACGGCCTTGTTTTGTCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62039 lncRNA upstream 117039 2910694 ~ 2910939 (+) True G49599
TU62038 lncRNA upstream 117350 2909662 ~ 2910628 (+) True G49598
TU62010 lncRNA upstream 141840 2885831 ~ 2886138 (+) True G49582
TU61966 lncRNA upstream 215085 2812174 ~ 2812893 (+) True G49541
TU61817 lncRNA upstream 563311 2445185 ~ 2464667 (+) True G49431
TU62224 lncRNA downstream 314104 3356699 ~ 3359529 (+) True G49738
TU62242 lncRNA downstream 371586 3414181 ~ 3443897 (+) True G49754
TU62240 lncRNA downstream 387302 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA downstream 401407 3444002 ~ 3445127 (+) True G49753
TU62428 lncRNA downstream 920533 3963128 ~ 3964014 (+) True G49914
AMCG00008514 mRNA upstream 6912 3020595 ~ 3021066 (+) True AMCG00008514
AMCG00008510 mRNA upstream 8057 3016456 ~ 3019921 (+) True AMCG00008510
AMCG00008509 mRNA upstream 24418 2994941 ~ 3003560 (+) True AMCG00008509
AMCG00008505 mRNA upstream 121037 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008497 mRNA upstream 204882 2815396 ~ 2823096 (+) True AMCG00008497
AMCG00008516 mRNA downstream 44585 3087180 ~ 3102783 (+) True AMCG00008516
AMCG00008515 mRNA downstream 76514 3119109 ~ 3124136 (+) True AMCG00008515
AMCG00008517 mRNA downstream 89285 3131880 ~ 3137332 (+) True AMCG00008517
AMCG00008523 mRNA downstream 310510 3353105 ~ 3355395 (+) True AMCG00008523
AMCG00008525 mRNA downstream 374916 3417511 ~ 3426260 (+) True AMCG00008525
TU62012 other upstream 139082 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 257934 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 816464 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 884668 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 922405 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 1113493 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1119463 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1519396 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2553428 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2695946 5738541 ~ 5742750 (+) True G50243

Expression Profile