RNA id: TU62224


Basic Information

Item Value
RNA id TU62224
length 1778
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G49738
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3356699 ~ 3359529 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGGAAAGAACAGTTTAAAGGTTAAATAGAACAATTTTTATTACAGTATCGTGTCTTTAACAATAGAAAGCACCCTCGATACAAGGCTAAAACACTGAAGTGTACAGCCTTGACGCAGTAaggctgtgctgtagtgtgtgaCCCAGCCCTGAGCCACTGCAGAAAGGCACTGTATCCACAATTGAGCCCTTTGTAAAGGGGAGCATCGCTGAGAAATCTCACCCCAGCACGGAGATGTGGAAGGCACGCTGGGTGTATATGTATTTCGTGCATATGGCTTTCATTCGTGGGGTGTTCATTCCCACACCCCCTGTCCTGCTTTCTGGCTTGCAGGACCggtttgaatatgaaatatttttttctaaacatttaaaaaggtctTGGAGGATTTCAGTCTGTCTTCCCTTCACACACAACTTACCCCCACTGTCCTGCGCCACCGGTTATCACCGCATGCCAGGTTGAGATGAGCTAAGCTCCTACAGTCTCTATGCACCCTGTGGTTTAGAGCTCTTATTGCAGCTGGAATGTGGATTGTTTGGCACAGTGGAATTGTGTAGTCtctatatgtattatatttgcatGTGGAGGTACTAAGGTGGGCTAATCCGTTCTGAGCTGGGGGGTGATAGTGAATGACCAGTAGGTCTCAGATGGTTTATGGTTAAGTAGCATGGCATGAGGAGGCCCCATAATGAGAAGTTCTGAATAGGAGTAAAAAGTGCTTTACTGCACTGTGTCTATGGGACGTTTGGGGATACACTATCTCGTTGCTAAATTACAACCTACACGCTCCGCCCGGTGTCTCCAGGACAGGTGTTGAGGCAGAGCTGAGTCCACTGGAACCAGGCTTGTAAGAACCGTAAACATCTAAAAACACTTGGTTCTCTCGGTGAATACCCACGCTAGTGCACAATTAAAAACGCATAGAAAAACAGCGAGGTTGGCACGTTTCAAAGGGATGGGGAGGAGCCAGGCTCTCACAGGATCCACAGTGTCAATAGACCCACTTGACCCAGGTGGGTTTTTCCCAGAGGTCTGTATGGCATGGTCTCCCACCGAGCCGCTTCTGTGAACACTGTTCACGTACagaccaacacacacagacgggtggAGAGGGGCTTCCTGTTGGTCAGTTCACACTACAGATGgatatgttgtttttcaatcaTGTACAAAACTTGTTAAAAAGGGACACAAAAAGAATAGTATCCCAAAACCTTTTTAACTGGACGGCTAAAGGAGCGCCGCCAACACGAACATGGGAAAGACACCGCAAATCGCGGTAAACACAAGCAGGGAGGAGAGGGAACAAAAGGAATTCAAAATAGTCTGCTATTGCAGTCCTCTCAGAAAAATGACATCACCTCGCCCCATTAACTGTTCCCCAGGtgggatgatgatgatgaaattTAAACTTCTGTATACAATTTAACAAACTAAACACTAGAGAGGTGTCTGGCAGGAATAAAAGTTCGGGGGGAAGCAAGGGGTTAAAGATTGTCGCTGGCAGCTCATCCGCTAGCGGTGCAGACCAATCAGGAGCAGGCTGACGGGACTGACCCGCCCTCAGCCTGGCTAAACTGCTGTAGGTGCGTGGCTCTCTTGTCAAACGGGGGGCGGAAGGGAGATCGGGACGGGAGTGGCAGGTCTGTCCGTCACAGCTGTGTGCTGGAGGCCTCCTCTGTGTCGTCGGTGTTGGCTCTGAGTTTGGAGAGAGCAGCGTGAATCCGGAACTGAGTCCTCGACTCCATGGAGTAGTCCTTGTAGTGGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62082 lncRNA upstream 314104 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 445760 2910694 ~ 2910939 (+) True G49599
TU62038 lncRNA upstream 446071 2909662 ~ 2910628 (+) True G49598
TU62010 lncRNA upstream 470561 2885831 ~ 2886138 (+) True G49582
TU61966 lncRNA upstream 543806 2812174 ~ 2812893 (+) True G49541
TU62242 lncRNA downstream 54652 3414181 ~ 3443897 (+) True G49754
TU62240 lncRNA downstream 70368 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA downstream 84473 3444002 ~ 3445127 (+) True G49753
TU62428 lncRNA downstream 603599 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 665572 4025101 ~ 4026246 (+) True G49938
AMCG00008523 mRNA upstream 1304 3353105 ~ 3355395 (+) True AMCG00008523
AMCG00008517 mRNA upstream 219367 3131880 ~ 3137332 (+) True AMCG00008517
AMCG00008515 mRNA upstream 232563 3119109 ~ 3124136 (+) True AMCG00008515
AMCG00008516 mRNA upstream 253916 3087180 ~ 3102783 (+) True AMCG00008516
AMCG00008514 mRNA upstream 335633 3020595 ~ 3021066 (+) True AMCG00008514
AMCG00008525 mRNA downstream 57982 3417511 ~ 3426260 (+) True AMCG00008525
AMCG00008526 mRNA downstream 70372 3429901 ~ 3431004 (+) False AMCG00008526
AMCG00008527 mRNA downstream 102874 3462403 ~ 3469127 (+) True AMCG00008527
AMCG00008529 mRNA downstream 208030 3567559 ~ 3581461 (+) True AMCG00008529
AMCG00008534 mRNA downstream 223592 3583121 ~ 3592683 (+) True AMCG00008534
TU62012 other upstream 467803 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 586655 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1145185 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1213389 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1251126 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 796559 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 802529 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1202462 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2236494 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2379012 5738541 ~ 5742750 (+) True G50243

Expression Profile