RNA id: TU62306


Basic Information

Item Value
RNA id TU62306
length 238
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G49802
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3373544 ~ 3379324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATACACAGCACTGACCTCACCAGAGACACGACTCACTGTGAAGAGGAAACCCCAGAAGATCAGAGTCCAGCTGGACTATGACAGGGGGGAGGTGTCATTGTCTGACCCCAGGGACAGCACACCTCTCTACACCTTTAAAGACACATTCACTGAGAGGCTGTTTCCATTCTTCTGTCCTTTTTCCCCTCTGCGAATCTGTCCAGTGAGGGTGTCTCTCTCAGTGCAATAGCACAGTGT

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62058 lncRNA downstream 398391 2974949 ~ 2975153 (-) True G49614
TU62048 lncRNA downstream 462916 2909662 ~ 2910628 (-) True G49606
TU61973 lncRNA downstream 549568 2823241 ~ 2823976 (-) True G49547
TU61913 lncRNA downstream 671122 2636915 ~ 2702422 (-) True AMCG00008491
TU61850 lncRNA downstream 936787 2377005 ~ 2436757 (-) True G49462
TU62310 lncRNA upstream 10879 3390203 ~ 3392090 (-) True G49806
TU62317 lncRNA upstream 34857 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA upstream 46458 3425782 ~ 3437347 (-) True G49810
TU62322 lncRNA upstream 51490 3430814 ~ 3863106 (-) True AMCG00008554
TU62366 lncRNA upstream 312056 3691380 ~ 3693261 (-) True G49858
AMCG00008528 mRNA downstream 2931 3356714 ~ 3370613 (-) True AMCG00008528
AMCG00008524 mRNA downstream 26771 3345535 ~ 3346773 (-) True AMCG00008524
AMCG00008522 mRNA downstream 137978 3230842 ~ 3235566 (-) True AMCG00008522
AMCG00008521 mRNA downstream 200573 3148638 ~ 3172971 (-) True AMCG00008521
AMCG00008518 mRNA downstream 242485 3128983 ~ 3131059 (-) True AMCG00008518
AMCG00008530 mRNA upstream 123438 3502762 ~ 3504414 (-) True AMCG00008530
AMCG00008531 mRNA upstream 142145 3521469 ~ 3528475 (-) True AMCG00008531
AMCG00008532 mRNA upstream 175215 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008536 mRNA upstream 221444 3600768 ~ 3611264 (-) True AMCG00008536
AMCG00008535 mRNA upstream 239325 3618649 ~ 3625092 (-) True AMCG00008535
TU62046 other downstream 464879 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1288538 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1492582 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1523262 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2432892 931892 ~ 940652 (-) False AMCG00008428
TU62371 other upstream 395259 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2369566 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2408426 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3568565 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3766301 7145625 ~ 7151472 (-) True G50476

Expression Profile